Merge remote-tracking branch 'upstream/dev' into dev

CHANGELOG.md

@@ -26,6 +26,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 - [[PR #401](https://github.com/nf-core/viralrecon/pull/401)] - Added option to add a custom annotation
 - [[PR #417](https://github.com/nf-core/viralrecon/pull/417)] - Allow skipping of Freyja bootstrapping module & freyja module update
 - [[PR #434](https://github.com/nf-core/viralrecon/pull/434)] - Add blast result filtering through `min_contig_length` and `min_perc_contig_aligned`.
+- [[PR #438](https://github.com/nf-core/viralrecon/pull/438)] - Update fastp container to 0.23.4
 - [[PR #]()] - Refactored old ivar_variants_to_vcf.py with new functionalities like a quality threshold.
 
 ### Parameters
@@ -54,6 +55,7 @@ Note, since the pipeline is now using Nextflow DSL2, each process will be run wi
 | ---------- | ----------- | ----------- |
 | `freyja`   |             | 1.5.0       |
 | `multiqc`  | 1.14        | 1.19        |
+| `fastp`    | 0.23.2      | 0.23.4      |
 
 > **NB:** Dependency has been **updated** if both old and new version information is present.
 >

modules.json

@@ -107,7 +107,7 @@
                     },
                     "fastp": {
                         "branch": "master",
-                        "git_sha": "95cf5fe0194c7bf5cb0e3027a2eb7e7c89385080",
+                        "git_sha": "1ceaa8ba4d0fd886dbca0e545815d905b7407de7",
                         "installed_by": ["modules"]
                     },
                     "fastqc": {