small changes to reader functions

BackofenLab · Sep 7, 2023 · 08a759b · 08a759b
1 parent 4db31a0
commit 08a759b
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/db/scripts/read/read_ensembl.py b/db/scripts/read/read_ensembl.py
@@ -84,10 +84,10 @@ def _reformat_ensembl_term_file(df: pd.DataFrame, file_name: str):
         "Mus_musculus.GRCm39.109.uniprot",
         "TFCheckpoint_download_180515",
         "lost_correlations_symbols",
-        "Homo_sapiens.GRCh38.110.ena.tsv",
-        "Homo_sapiens.GRCh38.110.entrez.tsv",
-        "Homo_sapiens.GRCh38.110.refseq.tsv",
-        "Homo_sapiens.GRCh38.110.uniprot.tsv",
+        "Homo_sapiens.GRCh38.110.ena",
+        "Homo_sapiens.GRCh38.110.entrez",
+        "Homo_sapiens.GRCh38.110.refseq",
+        "Homo_sapiens.GRCh38.110.uniprot",
     ]
     functions = [
         _reformat_entrez,

diff --git a/db/scripts/read/read_string.py b/db/scripts/read/read_string.py
@@ -153,8 +153,8 @@ def _reformat_string_file(df: pd.DataFrame, file_name: str):
         "protein.info.v11.5",
         "string_SYMBOL_ENSEMBL",
         "difference",
-        "9606.protein.links.v11.5",
-        "9606.protein.info.v11.5",
+        "9606.protein.links.v12.0",
+        "9606.protein.info.v12.0",
     ]
     functions = [
         _reformat_string_links,