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| # Structure of High IF Journals | ||
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| This document contains the structure of Journals having Impact Factor greater than 15 - taken from [10x Genomics](https://www.10xgenomics.com/publications). Only relevant sections from the journals are added. | ||
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| ### Programming languages used | ||
| * R | ||
| * Python | ||
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| ### Source code found on | ||
| * Github | ||
| * Zenodo | ||
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| ### Sequencing Dataset found on | ||
| * European Genome-phenome Archive (EGA) | ||
| * Gene Expression Omnibus (GEO) | ||
| * Sequence Read Archive (SRA) | ||
| * International Nucleotide Sequence Database Collaboration (INSDC) | ||
| * European Nucleotide Archive (ENA) | ||
| * Genome Sequence Archive (GSA) | ||
| * BioStudies: ArrayExpress (Gene expression data) | ||
| * database of Genotypes and Phenotypes (dbGaP) | ||
| * ProteomeXchange Consortium - PRIDE: stores data related to protein and peptide identifications | ||
| * ProteomeXchange Consortium - PeptideAtlas: stores datasets focusing on peptide identifications and their associated spectral evidence | ||
| * ImmPort (Immunology Database and Analysis Portal) | ||
| * Zenodo | ||
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| _________________________________________________________________ | ||
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| ## Cell: IF 45.5 | ||
| ### Resource availability | ||
| * materials availability | ||
| * **Data and Code/Software Availability** | ||
| * if code unavailable > “This paper does not report original code” (MUST BE ADDED but not always added) | ||
| * code available upon request from authors | ||
| * already-existing SWs and Algorithms used but no unique code generated - found in Key Resources Table | ||
| * ‘original code’ | ||
| * ‘unique code’ | ||
| * ‘custom code’ | ||
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| ## Nature Immunology: IF 27.7 | ||
| ### Data availability | ||
| * uploaded on database(s) mentioned above | ||
| * available upon request | ||
| * fasta files found under Supplementary Information as Supplementary Data (observed in only one publication so far) | ||
| * found under Source Data: ‘Fig.’ - .xlsx files | ||
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| ### Code availability | ||
| * ‘custom code’ | ||
| * ‘custom software’ | ||
| * ‘new codes’ | ||
| * ‘customized code’ | ||
| * not provided | ||
| * available from authors upon request | ||
| * no new code, used existing code |