-
General pipeline for scCircle-seq: (1) Mapping (2) QC with linear and circular spike-in reads ratio (3) Calling circle region for single cell (4) Reconstruct the circle with AA(https://github.com/virajbdeshpande/AmpliconArchitect) or AR(https://github.com/jluebeck/AmpliconReconstructor) (circle_map.sh) (4') Dissect the circle detected with Circle Map(https://github.com/iprada/Circle-Map) (circle_map_without_reconstruction.sh)
-
Scripts for calculating stability score and frequency of circle regions
-
Topic modeling using cisTopics
-
Notifications
You must be signed in to change notification settings - Fork 0
BiCroLab/scCircle-seq
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
No description, website, or topics provided.
Resources
Stars
Watchers
Forks
Packages 0
No packages published