This release includes mostly bugfixes and stability improvements. However, one change is potentially braking: subcontigs are now labeled with the suffix .concoct_part_XX where XX is the part number. This is enforced by the core script used to create the coverage table.
For a complete list of changes, see below:
Changed
- #236 - Always add suffix to contigs at cutup, even when they are not cut.
- #254 - Slight cleanup of concoct refine
- #258 - New suffices (
.concoct_part_XX) are now used for contig parts - #261 - Epsilon argument removed as it was not working and is not very useful
- #262 - Rewrote documentation, including installation instructions
- #264 -
concoct_part_suffix is enforced in subcontig for coverage script - #264 - Header line is enforced for input for
merge_cutup_clustering.pyandextract_fasta_bins.py - #267 - Updated documentation
Added
- #253 - A dockerfile useful to test the conda installation
- #258 - Tests for all fundamental scripts, including a new integration test data repository
- #259 - This changelog
- #262 - Added documentation for the core scripts used with concoct
- #265 - A warning is now printed when concoct runs in single threaded mode
Fixed
- #230 - Enable at least single threaded installation on Mac OSX
- #231 - Replace pandas .ix with .loc to fix deprecation warnings
- #246 - Limit some dependency version numbers for python 2
- #254 - Concoct refine now works with python 3
- #258 - Seed tests now working again
- #260 - Fix the dockerfile build by adding integration test data