test-datasets

This contains test data for the nextflow modules and pipelines.

⚠️ Do not merge your test data to the main branch! Each pipeline and module has a dedicated branch.

The structure of this repository is inspired by nf-core/test-datasets.

Adding data

Check to see if a branch already exists for the module or pipeline you want to test. If not, create a new branch and commit your data there.

Downloading test data

Due the large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.

git clone <url> --single-branch --branch <pipeline/modules/branch_name>

To subsequently clone other branches¹

git remote set-branches --add origin [remote-branch]
git fetch

Footnotes

1. From stackoverflow ↩