Ppenetrans_genomics

This repostiory contains the scripts used in the genomic assembly and analysis of P. penetrans RES148 Pacbio data.

Study ENA accession: PRJEB28224

PacBio read accession: ERR2736893; ERR2736894

Illumina read accession: ERR3367780

WGS sequence set: UZAC030000001-UZAC030000004

Assembly accession: GCA_900538055

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
Rscripts		Rscripts
depreciated_scripts		depreciated_scripts
genome_analysis_scripts		genome_analysis_scripts
genome_assembly_scripts		genome_assembly_scripts
plots		plots
PacBio_assembly_pipeline.sh		PacBio_assembly_pipeline.sh
README.md		README.md
barrnap.sh		barrnap.sh
bcgtree.sh		bcgtree.sh
blobtools.sh		blobtools.sh
ccs.sh		ccs.sh
checkm.sh		checkm.sh
circlator.sh		circlator.sh
diamond.sh		diamond.sh
hmmsearch.sh		hmmsearch.sh
iqtree.sh		iqtree.sh
make_KO_tabs.py		make_KO_tabs.py
pacasus-array.sh		pacasus-array.sh
pacbio-stats.xlsx		pacbio-stats.xlsx
pilon.sh		pilon.sh
prodigal.sh		prodigal.sh
prokka.sh		prokka.sh

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