upgrade rdflib dependency #87
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| name: Test BlueGraph | ||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: | ||
| - master | ||
| - github-action-test | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: 3.8 | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Get Neo4j from a third party repo and install | ||
| run: | | ||
| sudo add-apt-repository -y ppa:openjdk-r/ppa | ||
| sudo apt-get update | ||
| wget -O - https://debian.neo4j.com/neotechnology.gpg.key | sudo apt-key add - | ||
| echo 'deb https://debian.neo4j.com stable 5' | sudo tee -a /etc/apt/sources.list.d/neo4j.list | ||
| sudo apt-get update | ||
| sudo apt-get install neo4j=1:5.18.0 | ||
| - name: Download the graph data science lib | ||
| run: | | ||
| wget https://s3-eu-west-1.amazonaws.com/com.neo4j.graphalgorithms.dist/graph-data-science/neo4j-graph-data-science-1.8.6-standalone.zip | ||
| unzip neo4j-graph-data-science-1.8.6-standalone.zip | ||
| sudo cp neo4j-graph-data-science-1.8.6.jar /var/lib/neo4j/plugins/ | ||
| - name: Add conda to system path | ||
| run: | | ||
| # $CONDA is an environment variable pointing to the root of the miniconda directory | ||
| echo $CONDA/bin >> $GITHUB_PATH | ||
| - name: Useful for debugging any issues with conda | ||
| run: conda info -a | ||
| - name: Update the base env with graph-tool and faiss-gpu installed from conda-forge | ||
| run: | | ||
| conda install python=${{ matrix.python-version }} | ||
| conda env update --file test-environment.yml --name base | ||
| - name: Install the rest of the dependencies | ||
| run: | | ||
| python3 -m pip install .[dev] | ||
| - name: Configure the Neo4j database | ||
| run: | | ||
| sudo neo4j-admin set-initial-password neo4j | ||
| echo 'dbms.connector.bolt.listen_address=0.0.0.0:7687' | sudo tee -a /etc/neo4j/neo4j.conf | ||
| echo 'dbms.security.procedures.unrestricted=gds.*' | sudo tee -a /etc/neo4j/neo4j.conf | ||
| echo 'dbms.security.procedures.whitelist=gds.*' | sudo tee -a /etc/neo4j/neo4j.conf | ||
| cat /etc/neo4j/neo4j.conf | ||
| - name: Start a db instance and wait (it takes time to start) | ||
| run: | | ||
| sudo service neo4j restart | ||
| sleep 60 | ||
| - name: Test with pytest | ||
| run: | | ||
| pytest --cov=./bluegraph | ||
| - name: Upload to codecov | ||
| if: ${{matrix.python-version == '3.8'}} | ||
| uses: codecov/codecov-action@v1 | ||
| with: | ||
| fail_ci_if_error: false | ||
| files: ./coverage.xml | ||
| flags: pytest | ||
| name: "bluegraph-py38" | ||
