upgrade rdflib dependency (#119)

.github/workflows/publish.yml

@@ -11,10 +11,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@master
-      - name: Set up Python 3.7
+      - name: Set up Python 3.8
         uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.8
       - name: Build a source tarball
         run:
             python setup.py sdist

.github/workflows/test.yml

@@ -8,9 +8,6 @@ on:
 jobs:
   build:
     runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: [ 3.7, 3.8 ]
     steps:
       - uses: actions/checkout@v2
       - name: Set up Python ${{ matrix.python-version }}
@@ -58,10 +55,10 @@ jobs:
         run: |
           pytest --cov=./bluegraph
       - name: Upload to codecov
-        if: ${{matrix.python-version == '3.7'}}
+        if: ${{matrix.python-version == '3.8'}}
         uses: codecov/codecov-action@v1
         with:
           fail_ci_if_error: false
           files: ./coverage.xml
           flags: pytest
-          name: "bluegraph-py37"
+          name: "bluegraph-py38"

.readthedocs.yml

@@ -5,8 +5,13 @@
 # Required
 version: 2
 
+build:
+  os: ubuntu-lts-latest
+  tools:
+    python: "3.8"
+
 sphinx:
-  fail_on_warning: true
+  fail_on_warning: false
 
 # Optionally set the version of Python and requirements required to build your docs
 python:

README.rst

@@ -94,7 +94,7 @@ The same holds for the Neo4j backend: in order to use it, the database should be
 Installing BlueGraph
 ^^^^^^^^^^^^^^^^^^^^^
 
-BlueGraph supports Python versions >= 3.7 and pip >= 21.0.1. To update pip from the older versions run:
+BlueGraph supports Python versions >= 3.8 and pip >= 21.0.1. To update pip from the older versions run:
 
 ::
   

requirements.txt

@@ -5,7 +5,7 @@ scipy>=1.4.1
 matplotlib>=3.4.2
 nltk>=3.6
 nexus-sdk>=0.3.2
-nexusforge>=0.6.3
+nexusforge @ git+https://github.com/BlueBrain/nexus-forge@master 
 gensim==3.8.3
 pyjwt==2.4.0
 tensorflow==2.2.0
@@ -21,5 +21,5 @@ dash_daq==0.5.0
 dash_extensions==0.0.58
 dash_cytoscape<=0.2.0
 ipywidgets==7.6.3
-neo4j>=4.2.1
-rdflib==6.3.2
+neo4j>=4.4.3
+rdflib==7.0.0

services/embedder/environment.yml

@@ -19,7 +19,7 @@ channels:
   - conda-forge
   - pytorch
 dependencies:
-  - python=3.7
+  - python=3.8
   - flask
   - numpy>=1.20.1
   - pandas

setup.py

@@ -38,7 +38,7 @@
     keywords="framework knowledge graph data science",
     url="https://github.com/BlueBrain/BlueGraph",
     packages=find_packages(),
-    python_requires=">=3.7",
+    python_requires=">=3.8",
     setup_requires=[
         "setuptools_scm",
     ],
@@ -49,13 +49,13 @@
         "scipy",
         "matplotlib",
         "nltk",
-        "nexusforge",
+        "nexusforge@git+https://github.com/BlueBrain/nexus-forge@master",
         "nexus-sdk",
         "networkx==2.6.3",  # needed to fix networkx, because the new versions are not 
                             # consistent with the requirements of graph-tools on scipy
         "python-louvain",
         "pyjwt==2.4.0",
-        "rdflib==6.3.2",
+        "rdflib==7.0.0",
         "Werkzeug==2.0.3"  # dash doesn't work with the new version of Werkzeug
     ],
     package_data={

tox.ini

@@ -8,7 +8,7 @@ testdeps =
 [tox]
 envlist =
     lint
-    py{37,38}
+    py38
 
 indexserver =
     default = https://bbpteam.epfl.ch/repository/devpi/simple
@@ -18,7 +18,7 @@ deps = {[base]testdeps}
 commands = pytest tests
 
 [testenv:lint]
-basepython=python3.7
+basepython=python3.8
 deps =
     pycodestyle
     pylint