fix issue where FCC ignored the 'default_std_value' provided

BlueBrain · Nov 27, 2023 · f27ca2e · f27ca2e
1 parent f8b2742
commit f27ca2e
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diff --git a/bluepyemodel/efeatures_extraction/efeatures_extraction.py b/bluepyemodel/efeatures_extraction/efeatures_extraction.py
@@ -153,6 +153,7 @@ def extract_save_features_protocols(access_point, mapper=map):
         name_rin_protocol=access_point.pipeline_settings.name_Rin_protocol,
         validation_protocols=access_point.pipeline_settings.validation_protocols,
         stochasticity=access_point.pipeline_settings.stochasticity,
+        default_std_value=access_point.pipeline_settings.default_std_value,
     )
 
     fitness_calculator_config.init_from_bluepyefe(

diff --git a/bluepyemodel/evaluation/fitness_calculator_configuration.py b/bluepyemodel/evaluation/fitness_calculator_configuration.py
@@ -221,6 +221,7 @@ def __init__(
         self.name_rin_protocol = name_rin_protocol
 
         self.workflow_id = None
+        self.default_std_value = default_std_value
 
     def protocol_exist(self, protocol_name):
         return bool(p for p in self.protocols if p.name == protocol_name)
@@ -350,6 +351,7 @@ def init_from_bluepyefe(self, efeatures, protocols, currents, threshold_efeature
                     mean=currents["holding_current"][0],
                     std=currents["holding_current"][1],
                     threshold_efeature_std=threshold_efeature_std,
+                    default_std_value=self.default_std_value,
                 )
             )
 
@@ -361,6 +363,7 @@ def init_from_bluepyefe(self, efeatures, protocols, currents, threshold_efeature
                     mean=currents["threshold_current"][0],
                     std=currents["threshold_current"][1],
                     threshold_efeature_std=threshold_efeature_std,
+                    default_std_value=self.default_std_value,
                 )
             )