Fix: Handle near symetrical two major apical branches #312
arnaudon
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99 errors
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test_neuron_functional.test_convert_orientation2points:
tests/test_neuron_functional.py#L259
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 6 (100%)
Max absolute difference: 17.21720264
Max relative difference: 1.97487997
x: array([[ 3.988692, -4.746541, -8.403649],
[ 4.742347, 8.33385 , 4.137356]])
y: array([[ 2.770599, 4.868847, 8.813554],
[-6.314678, 6.2103 , 5.533321]])
|
|
test_neuron_functional.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L297
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 20
Max relative difference: 1.81818182
x: array([31])
y: array([11])
|
|
TestPathGrower.test_skip_rng_and_preprocessing:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_neuron_functional.test_basic_grower:
tests/test_neuron_functional.py#L134
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fd52dcc4e50>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fd52dcc4e50> = diff('/tmp/tmpeb7sc5entest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
|
test_neuron_functional.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L447
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 0.48995399
Max relative difference: 0.03906569
x: array([[ -0.735153, 7.644973, 11.233667],
[-12.953229, -1.245603, 2.840654],
[ 11.739761, -0.048908, 6.065145],
[ -2.473414, 13.031774, 1.161751]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
|
TestPathGrower.test_default:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_default:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestPathGrower.test_with_rng:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_extract_input.test_parameters:
tests/test_extract_input.py#L472
AssertionError:
Items are not equal:
key='std'
key='norm'
key='step_size'
key='basal_dendrite'
ACTUAL: 0.0
DESIRED: 0.2
|
|
TestBioRatL5Tpc1.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_with_rng:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestPathGrower.test_skip_preprocessing:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_skip_preprocessing:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_with_rng:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_default:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_skip_rng_and_preprocessing:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_default:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_skip_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_with_rng:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_with_rng:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_skip_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_skip_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_soma_grower:
tests/test_soma_grower.py#L452
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 9 (33.3%)
Max absolute difference: 0.10920715
Max relative difference: 0.04758658
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.375695, -8.734178, 14.549607]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
|
test_grower.test_grow__run[Use global numpy random seed]:
.tox/py311/lib/python3.11/site-packages/sklearn/ensemble/_hist_gradient_boosting/tests/test_grower.py#L280
TypeError: SpaceColonization.bifurcate() got an unexpected keyword argument 'two_major'
|
|
test_grower.test_grow__run[Use RNG instance with legacy constructor]:
.tox/py311/lib/python3.11/site-packages/sklearn/ensemble/_hist_gradient_boosting/tests/test_grower.py#L280
TypeError: SpaceColonization.bifurcate() got an unexpected keyword argument 'two_major'
|
|
test_soma_grower.test_apical_points:
tests/test_soma_grower.py#L471
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 17
Max relative difference: 0.13385827
x: array(110)
y: array([127])
|
|
TestBioRatL5Tpc2.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_default:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_with_rng:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_skip_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_default:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_neuron_functional.test_convert_orientation2points:
tests/test_neuron_functional.py#L259
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 6 (100%)
Max absolute difference: 17.21720264
Max relative difference: 1.97487997
x: array([[ 3.988692, -4.746541, -8.403649],
[ 4.742347, 8.33385 , 4.137356]])
y: array([[ 2.770599, 4.868847, 8.813554],
[-6.314678, 6.2103 , 5.533321]])
|
|
test_neuron_functional.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L297
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 20
Max relative difference: 1.81818182
x: array([31])
y: array([11])
|
|
TestPathGrower.test_skip_rng_and_preprocessing:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_neuron_functional.test_basic_grower:
tests/test_neuron_functional.py#L134
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f525df7e740>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f525df7e740> = diff('/tmp/tmpj2swp0h4test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
|
test_neuron_functional.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L447
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 0.48995399
Max relative difference: 0.03906569
x: array([[ -0.735153, 7.644973, 11.233667],
[-12.953229, -1.245603, 2.840654],
[ 11.739761, -0.048908, 6.065145],
[ -2.473414, 13.031774, 1.161751]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
|
TestPathGrower.test_default:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_default:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_extract_input.test_parameters:
tests/test_extract_input.py#L472
AssertionError:
Items are not equal:
key='std'
key='norm'
key='step_size'
key='basal_dendrite'
ACTUAL: 0.0
DESIRED: 0.2
|
|
TestPathGrower.test_with_rng:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_skip_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_with_rng:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestPathGrower.test_skip_preprocessing:
TestPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_skip_preprocessing:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestGradientPathGrower.test_skip_rng_and_preprocessing:
TestGradientPathGrower#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_default:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_default:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_soma_grower:
tests/test_soma_grower.py#L452
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 9 (33.3%)
Max absolute difference: 0.10920715
Max relative difference: 0.04758658
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.375695, -8.734178, 14.549607]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
|
test_soma_grower.test_apical_points:
tests/test_soma_grower.py#L471
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 17
Max relative difference: 0.13385827
x: array(110)
y: array([127])
|
|
TestBioRatL5Tpc1.test_with_rng:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
test_grower.test_grow__run[Use global numpy random seed]:
.tox/py310/lib/python3.10/site-packages/sklearn/ensemble/_hist_gradient_boosting/tests/test_grower.py#L280
TypeError: SpaceColonization.bifurcate() got an unexpected keyword argument 'two_major'
|
|
test_grower.test_grow__run[Use RNG instance with legacy constructor]:
.tox/py310/lib/python3.10/site-packages/sklearn/ensemble/_hist_gradient_boosting/tests/test_grower.py#L280
TypeError: SpaceColonization.bifurcate() got an unexpected keyword argument 'two_major'
|
|
TestBioRatL5Tpc2.test_with_rng:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc1.test_skip_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_skip_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc2.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_default:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_with_rng:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_skip_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc3.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_default:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
TestBioRatL5Tpc4.test_with_rng:
TestBioRatL5Tpc4#L1
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L620
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_extract_input.py.test_parameters:
tests/test_extract_input.py#L435
AssertionError:
Items are not equal:
key='std'
key='norm'
key='step_size'
key='basal_dendrite'
ACTUAL: 0.0
DESIRED: 0.2
|
|
tests/test_neuron_functional.py.test_convert_orientation2points:
tests/test_neuron_functional.py#L230
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 6 (100%)
Max absolute difference: 17.21720264
Max relative difference: 1.97487997
x: array([[ 3.988692, -4.746541, -8.403649],
[ 4.742347, 8.33385 , 4.137356]])
y: array([[ 2.770599, 4.868847, 8.813554],
[-6.314678, 6.2103 , 5.533321]])
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L722
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L285
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 20
Max relative difference: 1.81818182
x: array([31])
y: array([11])
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L630
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_basic_grower:
tests/test_neuron_functional.py#L404
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f5f9cb21610>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f5f9cb21610> = diff('/tmp/tmpb_mul8ngtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
|
tests/test_neuron_functional.py.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L424
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 0.48995399
Max relative difference: 0.03906569
x: array([[ -0.735153, 7.644973, 11.233667],
[-12.953229, -1.245603, 2.840654],
[ 11.739761, -0.048908, 6.065145],
[ -2.473414, 13.031774, 1.161751]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L458
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L468
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L733
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L528
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L641
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L479
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L538
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L490
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711276
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L744
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L652
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L549
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_soma_grower.py.test_soma_grower:
tests/test_soma_grower.py#L436
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 9 (33.3%)
Max absolute difference: 0.10920715
Max relative difference: 0.04758658
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.375695, -8.734178, 14.549607]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L560
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 24 / 30 (80%)
Max absolute difference: 6.52711158
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_soma_grower.py.test_apical_points:
tests/test_soma_grower.py#L456
AssertionError:
Arrays are not equal
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 17
Max relative difference: 0.13385827
x: array(110)
y: array([127])
|
|
tests/astrocyte/test_grower.py.test_grow__run[Use global numpy random seed]:
tests/astrocyte/test_grower.py#L246
TypeError: bifurcate() got an unexpected keyword argument 'two_major'
|
|
tests/astrocyte/test_grower.py.test_grow__run[Use RNG instance with legacy constructor]:
tests/astrocyte/test_grower.py#L246
TypeError: bifurcate() got an unexpected keyword argument 'two_major'
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L666
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L574
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L676
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L584
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L595
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L687
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L606
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780551
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L698
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97780123
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L712
AssertionError:
Arrays are not almost equal to 0 decimals
Mismatched elements: 99 / 166 (59.6%)
Max absolute difference: 5.97778481
Max relative difference: inf
x: [repr failed for <ndarray>: precision must be an integer]
y: [repr failed for <ndarray>: precision must be an integer]
|