install requirements

BlueBrain · Nov 25, 2024 · ad2c218 · ad2c218
1 parent 06a97f0
commit ad2c218
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Showing 3 changed files with 7 additions and 10 deletions.
diff --git a/.github/workflows/on_tag.yml b/.github/workflows/on_tag.yml
@@ -15,7 +15,7 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: 3.9
-      - name: Build a source tarball
+      - name: Install build
         run: |
           python -m pip install --upgrade pip
           python -m pip install build

diff --git a/Dockerfile b/Dockerfile
@@ -24,7 +24,7 @@ COPY .. .
 #	export PATH=$PATH:$PWD/build/bin
 
 # Install the pipeline repository (along with the bbp-atlas CLI)
-RUN pip install .
+RUN pip install -r requirements.txt
 
 # Install dependencies
 

diff --git a/requirements.txt b/requirements.txt
@@ -1,13 +1,10 @@
-pytest
-pytest-cov
-pyyaml
 nexusforge>=0.8.2
-sphinx
-sphinx-bluebrain-theme
-myst-parser
+click
 numpy
+pynrrd
+pyyaml
 voxcell
-click
+pulp==2.7.0  # snakemake 7.32.3 breaks with pulp==2.8.0
+snakemake==7.32.3
 blue-cwl
-pipeline-validator>=0.3.1
 python-gitlab