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Feature/restructure #14

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merged 42 commits into from
Dec 20, 2023
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a181b11
Minor update
sebastianbossert Dec 4, 2023
f21d98b
minor update
sebastianbossert Dec 5, 2023
7a0dac7
- updated getPosterior to handle data = NULL
wojcieko Dec 7, 2023
ff9a940
- updated getContr()
wojcieko Dec 7, 2023
3df7e38
Combination of restructure and main branch (with documentation)
sebastianbossert Dec 11, 2023
629c5ad
- removed getPriorList from exported functions
wojcieko Dec 11, 2023
3a53852
- changes to merge commits
wojcieko Dec 11, 2023
893ea85
- some Rd file that was overlooked
wojcieko Dec 11, 2023
7c04fc6
- soved merge in vignette
wojcieko Dec 11, 2023
d62f037
- renaming functions
wojcieko Dec 12, 2023
1ea587f
- addressing some Notes & Warning from devtools::check()
Dec 12, 2023
25f8f28
- fixed average success rate in assessDesign and added as attribute
wojcieko Dec 14, 2023
7ff4008
Minor update in documentation of getContr
Dec 15, 2023
d2ae165
additional documentation getContr
sebastianbossert Dec 15, 2023
24ef42d
Addition of performBayesianMCPMod function within vignette
sebastianbossert Dec 15, 2023
a289dff
First updates around documentation
sebastianbossert Dec 15, 2023
cb4cf39
Additional documentation around getContr and other functions
sebastianbossert Dec 15, 2023
6d52c2a
- fixed bug in getCritProb
wojcieko Dec 15, 2023
fff41e1
Changed the trial number for the vignette example
sebastianbossert Dec 18, 2023
01a1d24
Merge branch 'feature/restructure' of https://github.com/Boehringer-I…
sebastianbossert Dec 18, 2023
f852df6
Vignette updated.
sebastianbossert Dec 18, 2023
1700b38
Updates around documentation of functions and vignette.
sebastianbossert Dec 18, 2023
44ccf9e
Additional updates (e.g. to fix bug around print of BayesianMCPMod)
sebastianbossert Dec 18, 2023
c16c991
Additional updates around the function documentations.
sebastianbossert Dec 18, 2023
20e0baa
Additional examples for documentation added
sebastianbossert Dec 18, 2023
6440e34
Additional documentations added (and minor update in vignette)
sebastianbossert Dec 18, 2023
81dab25
Additional updates around the documentation.
sebastianbossert Dec 18, 2023
da6e852
References added to the documentation.
sebastianbossert Dec 18, 2023
69d6569
- beautification
wojcieko Dec 18, 2023
9a4ce45
Bug fixes around BMCTTest functions
sebastianbossert Dec 19, 2023
d49821a
Further updates around documentation and simulation vignette.
sebastianbossert Dec 19, 2023
1f76915
Further updates (to fix problems with links and documentation).
sebastianbossert Dec 19, 2023
fdca49e
Bug fix for assess design (to have correct display for cases where in…
sebastianbossert Dec 19, 2023
62aceac
Additional updates around documentation.
sebastianbossert Dec 19, 2023
f17ff92
Example for simulation added
sebastianbossert Dec 19, 2023
46f6a7a
Minor correction in formulas of getModelfits documentation
sebastianbossert Dec 20, 2023
6772ec7
Deletion of unnecessary code chunks in analysis example.
sebastianbossert Dec 20, 2023
3390fd7
Correction of typo (DoseFinding) and deletion of tests (so that packa…
sebastianbossert Dec 20, 2023
5c4cfaf
Update of error in example code in assessdesign
sebastianbossert Dec 20, 2023
9b9857d
minor fixes in examples
Dec 20, 2023
2de0df6
minor fix
Dec 20, 2023
b241cf6
added optional param for predict.modelFits func
Dec 20, 2023
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17 changes: 10 additions & 7 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -2,26 +2,29 @@ Package: BayesianMCPMod
Title: Bayesian MCPMod
Version: 0.1.3-3
Authors@R: c(
person("Sebastian", "Bossert",
role = "aut",
email = "[email protected]"),
person("Boehringer Ingelheim Pharma GmbH & Co. KG",
role = c("cph", "fnd")),
person("Stephan", "Wojciekowski",
role = c("aut", "cre"),
email = "[email protected]"),
person("Lars", "Andersen",
role = "aut",
email = "[email protected]"),
person("Boehringer Ingelheim Pharma GmbH & Co. KG",
role = c("cph", "fnd"))
person("Steven", "Brooks",
role = "aut",
email = "[email protected]"),
person("Sebastian", "Bossert",
role = "aut",
email = "[email protected]")
)
Description: Provides functions for the analysis of dose finding trials with Bayesian MCPMod.
Description: Provides functions for the planning and analysis of dose finding trials with Bayesian MCPMod.
License: Apache License (>= 2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports:
DoseFinding,
DoseFinding (>= 1.1-1),
ggplot2,
stats,
RBesT,
Expand Down
8 changes: 4 additions & 4 deletions NAMESPACE
Original file line number Diff line number Diff line change
@@ -1,19 +1,19 @@
# Generated by roxygen2: do not edit by hand

S3method(plot,modelFits)
S3method(predict,ModelFits)
S3method(predict,modelFits)
S3method(print,BayesianMCP)
S3method(print,BayesianMCPMod)
S3method(print,modelFits)
S3method(print,postList)
S3method(summary,postList)
export(assessDesign)
export(getBootstrapBands)
export(getContrMat)
export(getBootstrapQuantiles)
export(getContr)
export(getCritProb)
export(getESS)
export(getModelFits)
export(getPosterior)
export(getPriorList)
export(performBayesianMCP)
export(performBayesianMCPMod)
export(simulateData)
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