remove tidyverse deps (#7)

fix linting

.lintr

@@ -0,0 +1,4 @@
+linters: linters_with_defaults(
+       line_length_linter = line_length_linter(120),
+       object_usage_linter = NULL
+  )

Dockerfile

@@ -7,8 +7,13 @@ FROM ${OS_NAME}:${OS_VERSION}
 
 ARG R_VERSION=latest
 ARG CRAN=https://packagemanager.posit.co/cran/__linux__/jammy/latest
+
+# https://github.com/jgm/pandoc/tags
 ARG PANDOC_VERSION=2.9.2.1
+# https://github.com/quarto-dev/quarto-cli/tags
 ARG QUARTO_VERSION=1.3.450
+# https://github.com/lycheeverse/lychee-action/tags
+ARG LYCHEE_VERSION=0.14.3
 
 # Set up environment 
 ENV R_HOME=/usr/local/lib/R
@@ -21,8 +26,7 @@ RUN /rocker_scripts/install_R_source.sh && \
     /rocker_scripts/setup_R.sh && \
     /rocker_scripts/install_pandoc.sh && \
     /rocker_scripts/install_quarto.sh && \
-    /rocker_scripts/install_texlive.sh && \
-    /rocker_scripts/install_tidyverse.sh
+    /rocker_scripts/install_texlive.sh
 
 COPY scripts /scripts
 RUN /scripts/install_sys_deps.sh && \

scripts/install_r_pkgs.R

@@ -5,8 +5,15 @@ install.packages("pak")
 
 # Packages to install
 install_pkgs <- c(
-  "shinytest2",
+  "boehringer-ingelheim/davinci",
+  "rcmdcheck",
+  "roxygen2",
   "lintr",
+  "pkgdown",
+  "rmarkdown",
+  "devtools",
+  "pharmaverseadam",
+  "shinytest2",
   "golem",
   "shinymeta",
   "shinyjs",
@@ -24,3 +31,6 @@ pak::pak(
   ask = FALSE,
   upgrade = FALSE
 )
+
+# Remove DaVinci packages from image
+grep("^dv.", rownames(installed.packages()), value = TRUE) |> sapply(remove.packages)

scripts/install_sys_deps.sh

@@ -7,6 +7,7 @@ curl \
 lbzip2 \
 rsync \
 qpdf \
+wget \
 "
 apt-get update -y
 # shellcheck disable=SC2086
@@ -18,4 +19,4 @@ apt-get autoclean -y
 rm -rf /var/lib/apt/lists/*
 
 # Install lychee URL checker
-curl -sL "https://github.com/lycheeverse/lychee/releases/download/v0.14.3/lychee-v0.14.3-x86_64-unknown-linux-gnu.tar.gz" | tar -xvzf - -C "/usr/local/bin"
+curl -Ls https://github.com/lycheeverse/lychee/releases/download/v"${LYCHEE_VERSION}"/lychee-v"${LYCHEE_VERSION}"-"$(arch)"-unknown-linux-gnu.tar.gz | tar xz -C /usr/local/bin