table-validator

Use tables with validation schemata to validate other tables.

Dependencies

• INFO: Source Code of the Compund Parser by Lukrécia Mertová: https://github.com/mertova/Compound_parser_hackethon2019

Installation

Install directly from GitHub with:

$ pip install git+https://github.com/cthoyt/table-validator.git

Testing

Install tox with pip install tox then run with tox.

Usage

Desktop Usage

To run the desktop interface, you also need to install the PyQt5 package with pip then run:

$ python -m table_validator.desktop

The --template option can specify a template file other than template.tsv in the current directory.

Web Usage

To run the web interface, you also need to run

$ pip install flask flask-wtf flask-bootstrap

then run

$ python -m table_validator.web

The --template option can specify a template file other than template.tsv in the current directory.

CLI Usage

Installation with pip adds a command table_validator that takes two arguments: a path to the template file, and a path to the candidate file. Given files template.tsv and candidate.tsv:

# template.tsv
    C_A C_B C_C
R_1 {INT(REQUIRED=TRUE)}    {INT(REQUIRED=TRUE)}    {INT(REQUIRED=TRUE)}

# candidate.tsv
    C_A C_B C_C
R_1 1       2       3

You can run:

$ table_validator template.tsv candidate.tsv