Preparing students to apply for a research position in genomic data science [slides]
- Overview of Modules
- Interactive LearnR Tutorials
- Sample Schedule
- Student Professional Development
- Getting Help
Start your genomics adventure at Clovis Community College this Fall 2021
Assumes high school biology and algebra, but no programming experience
See Sample Schedule for additional details
- Data Exploration: Researching genes using biological databases
- What Makes Cells Different? [slides]
- Spreadsheet of Gene Expression [slides]
- Biological Databases (Assignment / Discussion) [assignment]
- Data Exploration Project (Start / Finish / Presentation) [assignment]
- Single Cell: Increasing genomic resolution with new technologies
- What Does Single Cell Enable?
- cellxgene for scRNA-seq (Assignment / Discussion) [slides]
- Single Cell Project (Start / Finish / Present)
- Pathway Analysis: Integrating genes using molecular networks
- How Do Genes Work Together?
- KEGG for Pathways (Assignment / Discussion) [slides]
- Pathway Analysis Project (Start / Finish / Present)
- Genes and Genomes: Understanding the role of genome organization
- How Are Genes Regulated?
- Genome Browser (Assignment / Discussion)
- Genes and Genomes Project (Start / Finish / Present)
- Scientific Literature
- How to Read a Paper
- Figure Analysis [template]
- Reproducing Individual Results
- Project Work
- Generating Hypotheses
- Peer Review
- How to Make a Poster
- Student Professional Development
- Apply for Next Research Experience
- Poster Symposium
- Web Portfolio
Preview some of our tutorials at cure-rnaseq/tutorials
Note: Rendered previews are provided where possible, but tutorials that involve larger datasets or require more compute may not be available. Tutorials run in most Shiny environments (e.g. local RStudio, sciserver.org, mybinder.org, shinyapps.io).
- Lecture: Welcome to Your Genomics Adventure! [slides]
- Lecture: The Scientific Process [slides]
- Activity: Create Accounts
- Join SciServer [assignment][video][slides]
- Join Discourse
- Assignment: Post to Discourse Forums [assignment]
- Lecture: What Makes Cells Different? [slides]
- Activity: Spreadsheet of Gene Expression [slides]
- Activity: First learnR Tutorial [assignment]
- Assignment: Biological Databases [assignment]
- Discussion: Biological Databases [assignment]
- Assignment: Data Exploration Project (Start) [assignment][gene list]
- Activity: Test DriveR [source]
- Assignment: Meet R! [assignment][source][preview]
- Assignment: Data Exploration Project (Finish) [assignment][gene list]
- Presentation: Data Exploration Project [assignment][gene list]
- Lecture: What Does Single Cell Enable?
- Assignment: Introduction to RStudio [assignment]
- Start RStudio [video][slides]
- First Swirl (Basic Building Blocks)
- Assignment: Swirl -- The basics of programming in R (3,4,5,6,8,12)
- Assignment: RStudio Console
- Assignment: cellxgene for scRNA-seq [slides]
- Discussion: cellxgene for scRNA-seq [slides]
- Assignment: Single Cell Project (Start)
- Activity: Managing Data in the Cloud
- Assignment: R for Data Science (Introduction)
- Assignment: Single Cell Project (Finish)
- Presentation: Single Cell Project
- Lecture: How Do Genes Work Together?
- Assignment: Working with R Notebooks
- Assignment: Orchestrating Single-Cell Analysis (Overview)
- Assignment: R for Data Science (Data Visualization)
- Assignment: KEGG for Pathways [slides]
- Set Up Website
- Personalize Website
- Add Posts
Join the conversation in our Slack or Discourse forums!
C-MOOR is supported in part by Carnegie Science Venture Grant and NSF DUE Award #2021013
