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Issues: CDCgov/NCHHSTP-DTBE-Varpipe-WGS

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10 Open 7 Closed
10 Open 7 Closed
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Issues list

Pipeline failing/producing empty outputs
#18 opened Jun 25, 2024 by RuanSpies21
Parallel processing of samples in Varpipe_wgs
#17 opened Jan 22, 2024 by DrB-S
what is the QC standards in the pipeline?
#15 opened Jul 26, 2023 by ybdong919
QC log : failed QC checks
#14 opened Jul 25, 2023 by ybdong919
How to run the singularity image of the pipeline in a script?
#13 opened Jul 25, 2023 by ybdong919
runVarpipeline.sh isn't located in /varpipe_wgs/data in ghcr.io/cdcgov/varpipe_wgs_with_refs:latest
#12 opened Jul 13, 2023 by erinyoung
1
Docker image is not compatible with gitpod
#11 opened Jul 10, 2023 by erinyoung
Running Pipeline after Local install
#9 opened Feb 23, 2023 by whottel
Process map_reads (1) terminated with an error exit status (127) Command error: .command.sh: line 2: clockwork: command not found
#6 opened Jan 31, 2023 by ybdong919
Process map_reads (1) terminated with an error exit status (1)
#2 opened Jan 30, 2023 by ybdong919
1
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