Code

Add differenced AR models#134

Code

Merged

seabbs merged 58 commits intomainCDCgov/Rt-without-renewal:mainfrom diff-latent-modelCDCgov/Rt-without-renewal:diff-latent-modelCopy head branch name to clipboardMar 15, 2024

+285-2

Commits

Commits on Mar 14, 2024

• first pass at AR model

  seabbs

  committed
  0e32d50

• move files around and add differencing infrastructure

  seabbs

  committed
  57d4fcf

• remove scaffold comment

  seabbs

  committed
  47613aa

• change arg order

  seabbs

  committed
  105d8b4

• clean up use of new

  seabbs

  committed
  34635c7

• reorg based on main

  seabbs

  committed
  24b29b8

• improve testing

  seabbs

  committed
  cb53aea

• catching out of date export

  seabbs

  committed
  b54918e

• update to use parametric types and use @kwdef to simplify construction

  seabbs

  committed
  4cd8307

• update to use parameters.jl and drop p calc in struct as don't work with having defaults

  seabbs

  committed
  3142f20

• work through tests

  seabbs

  committed
  668b7ee

• check tests and add basic docs

  seabbs

  committed
  50c5673

• tweak docs

  seabbs

  committed
  030193f

• clean up merge issues

  seabbs

  committed
  e11a2e9

• reimplement AR

  seabbs

  committed
  9a172f9

• reimplement AR

  seabbs

  committed
  e21e6fc

Commits on Mar 15, 2024

• fix AR

  seabbs

  committed
  e34e952

• fix current AR tests

  seabbs

  committed
  8f5d203

• current tests passing

  seabbs

  committed
  4164ec4

• copy doc strings everywhere

  seabbs

  committed
  54676d5

• reorder tests for RandomWalk

  seabbs

  committed
  83b2022

• add AR(2)

  seabbs

  committed
  42364fe

• update ar default

  seabbs

  committed
  03c7c5b

• first pass at AR model

  seabbs

  committed
  455c36b

• move files around and add differencing infrastructure

  seabbs

  committed
  b8668f2

• remove scaffold comment

  seabbs

  committed
  d2e0e72

• clean up use of new

  seabbs

  committed
  f51c17f

• reorg based on main

  seabbs

  committed
  3220e4f

• remove differenced model for its own PR

  seabbs

  committed
  2724d96

• update to use parametric types and use @kwdef to simplify construction

  seabbs

  committed
  04e7ceb

• update to use parameters.jl and drop p calc in struct as don't work with having defaults

  seabbs

  committed
  1d76b45

• work through tests

  seabbs

  committed
  3d2fec1

• check tests and add basic docs

  seabbs

  committed
  5936ae4

• tweak docs

  seabbs

  committed
  a4d2cc7

• first pass at AR model

  seabbs

  committed
  cebe727

• move files around and add differencing infrastructure

  seabbs

  committed
  b9c853c

• add differenced latent model

  seabbs

  committed
  49b7875

• add default diff latent priors

  seabbs

  committed
  486c25c

• clean up comments

  seabbs

  committed
  e50db06

• fix simple example

  seabbs

  committed
  6d23f52

• improve draft tests

  seabbs

  committed
  3d389fb

• Add normal util

  

  SamuelBrand1

  authored and

  seabbs

  committed
  d2a967f

• Change DiffLatentModel constructor

  

  SamuelBrand1

  authored and

  seabbs

  committed
  259909c

• distribution tests for DiffLatentModel on randomwalk

  

  SamuelBrand1

  authored and

  seabbs

  committed
  3262568

• doc strings for DiffLatentModel

  

  SamuelBrand1

  authored and

  seabbs

  committed
  80405ae

• remove unnecessary default prior creation

  

  SamuelBrand1

  authored and

  seabbs

  committed
  b21b920

• style change to use _ for unused loop var

  

  SamuelBrand1

  authored and

  seabbs

  committed
  b7c5aba

• doc string for generated_latent method

  

  SamuelBrand1

  authored and

  seabbs

  committed
  60a673d

• clean up further merging issues

  seabbs

  committed
  8b1e20a

• clena out utils duplicate

  seabbs

  committed
  bab886e

• update to new module structure and utils

  seabbs

  committed
  a343912

• add back in scan.jl

  seabbs

  committed
  5db0d93

• clean up more leakage from main/git hygiene

  seabbs

  committed
  cbc892b

• add defaults to difflatentmodel

  seabbs

  committed
  9b379ed

• get first difflatent test passing

  seabbs

  committed
  4581522

• fix final DiffLatent test

  seabbs

  committed
  b0a7731

• Merge branch 'main' into diff-latent-model

  seabbs

  authored
  ef49536

• Update EpiAware.jl

  seabbs

  authored
  2f0efae