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update pipeline deps #263

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Jun 6, 2024
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8 changes: 4 additions & 4 deletions pipeline/Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -21,16 +21,16 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"

[compat]
ADTypes = "0.2"
ADTypes = "1.2"
AbstractMCMC = "5.2"
CSV = "0.10"
Dagger = "0.18"
DataFramesMeta = "0.14"
Dates = "1.10"
DataFramesMeta = "0.15"
Dates = ">= 1.9"
Distributions = "0.25"
DocStringExtensions = "0.9"
DrWatson = "2.15"
JLD2 = "0.4"
Plots = "1.40"
Statistics = "1.10"
julia = "1.10"
julia = ">= 1.9"
3 changes: 1 addition & 2 deletions pipeline/test/end-to-end/test_prior_predictive.jl
Original file line number Diff line number Diff line change
@@ -1,8 +1,7 @@
using Test
@testset "run prior predictive modelling for random scenario" begin
using DrWatson, EpiAware
quickactivate(@__DIR__(), "Analysis pipeline")
include(srcdir("EpiAwarePipeline.jl"))
quickactivate(@__DIR__(), "EpiAwarePipeline")

using EpiAwarePipeline
pipeline = RtwithoutRenewalPriorPipeline()
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2 changes: 1 addition & 1 deletion pipeline/test/simulate/test_TruthSimulationConfig.jl
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
using Distributions, EpiAwarePipeline, EpiAware
# Define a mock TruthSimulationConfig object for testing
config = TruthSimulationConfig(
truth_process = fill(1.5, 10), gi_mean = 2.0, gi_std = 2.0)
truth_process = fill(1.5, 30), gi_mean = 2.0, gi_std = 2.0)
# Test the simulate function
result = simulate(config)

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