Dataframe constructor script for scoring #403
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR makes a parallel dataframe creator to the analysis dataframe used to make figs 1 and 2. This dataframe has the CRPS scores for the various target processes mentioned in #401 .
NB: this PR uses
summarise_crps
again to address a missing feature of #401 in combination with out pipeline. The missing feature is that we are not aiming to do inference on infection generating processesDirectInfections
andExpGrowth
for mis-specified GI means (because this does not affect the simulation of these processes). This gets addressed in the same way as it was for creating the analysis dataframe by for these IGPs iterating over the GI scenarios.This does not close #402 , but contributes the underlying dataframe that we can build a visualisation from.