Issue 541: Changelog for prior changes and fix the data ingestion step

[SamuelBrand1]

As per title, this PR closes #541 .

Extra addition is that the data ingestion script also creates a table of failed inferences 54 / 1440 failed; this follows the table approach in the supporting information quarto nb and should be added to the SI nb (new issue though IMO).

[github-actions]

Try this Pull Request!

Open Julia and type:

import Pkg
Pkg.activate(temp=true)
Pkg.add(url="https://github.com/CDCgov/Rt-without-renewal", rev="latest-analysis2", subdir="EpiAware")
using EpiAware

[seabbs]

Nice. LGTM

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 91.04%. Comparing base (173d96e) to head (c36add2).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #548   +/-   ##
=======================================
  Coverage   91.04%   91.04%           
=======================================
  Files          61       61           
  Lines         871      871           
=======================================
  Hits          793      793           
  Misses         78       78           

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