Basic output schema

CDCgov · Oct 1, 2024 · 6024c04 · 6024c04
1 parent a1a29a5
commit 6024c04
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Showing 9 changed files with 619 additions and 133 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -29,14 +29,16 @@ Imports:
     cli,
     data.table,
     DBI,
+    dplyr,
     duckdb,
     EpiNow2 (>= 1.4.0),
+    jsonlite,
     rlang,
     rstan,
     tidybayes
 Additional_repositories:
     https://mc-stan.org/r-packages/
 URL: https://cdcgov.github.io/cfa-epinow2-pipeline/
 Depends:
-    R (>= 2.10)
+    R (>= 3.50)
 LazyData: true
diff --git a/NAMESPACE b/NAMESPACE
@@ -3,15 +3,18 @@
 export(apply_exclusions)
 export(download_from_azure_blob)
 export(extract_diagnostics)
-export(extract_samples_from_fit)
 export(fetch_blob_container)
 export(fetch_credential_from_env_var)
 export(fit_model)
 export(format_delay_interval)
 export(format_generation_interval)
 export(format_right_truncation)
 export(low_case_count_diagnostic)
+export(process_quantiles)
+export(process_samples)
 export(read_data)
 export(read_disease_parameters)
 export(read_exclusions)
 export(read_interval_pmf)
+export(write_model_outputs)
+export(write_output_dir_structure)