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v2.1.1

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@jvhagey jvhagey released this 25 Mar 16:13
· 1 commit to main since this release
v2.1.1
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v2.1.1 (03/25/2024)

Full Changelog

Implemented Enhancements:

  • The following OXA genes were added to be highlighted as blaOXA-48 like in the griphin summary: "blaOXA-1167","blaOXA-1181","blaOXA-1200","blaOXA-1201","blaOXA-1205","blaOXA-1207","blaOXA-1211","blaOXA-1212","blaOXA-1213".

Fixed Bugs:

  • Fix for issue #130 Identified when an Isolate is incorrectly assigned to cronobacter scheme when it should have been ecloacae. Extension of larger scoring problem with MLST-2.23.0.
  • Fixed #142 where names with multiple instances of "R2" in their name couldn't be parsed properly and don't move past the corruption check step. commit 7fc0ac3c026b7c12608be4dd1d3682675e31d0fe
  • Fixed an issue in FASTANI. The file for checking 80%+ identity could not be found because the DB_Version was not set when "No Mash Hits found" occurs.
  • Updated amrfinderplus container from BLAST v2.14.0 --> v2.15.0 to fix #144.

Container Updates:

Database Updates:

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