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add tests for score_hubverse.R #464

add tests for score_hubverse.R

add tests for score_hubverse.R #464

Workflow file for this run

name: Create Docker Image
on:
push:
branches: [main]
pull_request:
workflow_dispatch:
env:
REGISTRY: cfaprdbatchcr.azurecr.io
IMAGE_NAME: pyrenew-hew
PYRENEW_VERSION: v0.1.1
jobs:
build-dependencies-image:
runs-on: cfa-cdcgov
name: Build dependencies image
outputs:
tag: ${{ steps.image-tag.outputs.tag }}
commit-msg: ${{ steps.commit-message.outputs.message }}
branch: ${{ steps.branch-name.outputs.branch }}
steps:
#########################################################################
# Retrieving the commit message
# We need to ensure we are checking out the commit sha that triggered the
# workflow, not the PR's head sha. This is because the PR's head sha may
# be a merge commit, which will not have the commit message we need.
#########################################################################
- name: Checkout code
uses: actions/checkout@v4
with:
ref: ${{ github.event.pull_request.head.sha }}
- name: Getting the commit message
id: commit-message
run: echo "message=$(git log -1 --pretty=%s HEAD)" >> $GITHUB_OUTPUT
- name: Checking out the latest (may be merge if PR)
uses: actions/checkout@v4
# From: https://stackoverflow.com/a/58035262/2097171
- name: Extract branch name
shell: bash
run: echo "branch=${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}" >> $GITHUB_OUTPUT
id: branch-name
#########################################################################
# Getting the tag
# The tag will be used for both the docker image and the batch pool
#########################################################################
- name: Figure out tag (either latest if it is main or the branch name)
id: image-tag
run: |
if [ "${{ steps.branch-name.outputs.branch }}" = "main" ]; then
echo "tag=latest" >> $GITHUB_OUTPUT
else
echo "tag=${{ steps.branch-name.outputs.branch }}" >> $GITHUB_OUTPUT
fi
- name: Check cache for base image
uses: actions/cache@v4
id: cache
with:
key: docker-dependencies-${{ runner.os }}-${{ hashFiles('./Containerfile.dependencies') }}-${{ steps.image-tag.outputs.tag }}
lookup-only: true
path:
./Containerfile.dependencies
- name: Login to the Container Registry
if: steps.cache.outputs.cache-hit != 'true'
uses: docker/login-action@v3
with:
registry: "cfaprdbatchcr.azurecr.io"
username: "cfaprdbatchcr"
password: ${{ secrets.CFAPRDBATCHCR_REGISTRY_PASSWORD }}
- name: Build and push
if: steps.cache.outputs.cache-hit != 'true'
uses: docker/build-push-action@v6
with:
push: true
no-cache: true
tags: |
${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}-dependencies:${{ steps.image-tag.outputs.tag }}
file: ./Containerfile.dependencies
build-args: |
PYRENEW_VERSION=${{ env.PYRENEW_VERSION }}
build-pipeline-image:
name: Build pipeline image
needs: build-dependencies-image
runs-on: cfa-cdcgov
outputs:
tag: ${{ needs.build-dependencies-image.outputs.tag }}
commit-msg: ${{ needs.build-dependencies-image.outputs.commit-msg }}
steps:
- name: Login to the Container Registry
uses: docker/login-action@v3
with:
registry: "cfaprdbatchcr.azurecr.io"
username: "cfaprdbatchcr"
password: ${{ secrets.CFAPRDBATCHCR_REGISTRY_PASSWORD }}
- name: Build and push model pipeline image for Azure batch
id: build_and_push_model_image
uses: docker/build-push-action@v6
with:
push: true # This can be toggled manually for tweaking.
tags: |
${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ needs.build-dependencies-image.outputs.tag }}
file: ./Containerfile
build-args: |
TAG=${{ needs.build-dependencies-image.outputs.tag }}
GIT_COMMIT_SHA=${{ github.event.pull_request.head.sha || github.sha }}
GIT_BRANCH_NAME=${{ needs.build-dependencies-image.outputs.branch }}