R CMD check project packages

update from June codebase #30

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5 warnings

Missing link or links in Rd file 'dot-do_1_pps_analysis.Rd':

Undocumented code objects:

Functions or methods with usage in Rd file 'fit_model.Rd' but not in code:

Undocumented arguments in Rd file 'boxplot_whiskers.Rd'

Files in the 'vignettes' directory but no files in 'inst/doc':

This job succeeded