V1.9 2024 04 01 run (#15)

CDCgov · Apr 1, 2024 · 2925263 · 2925263
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commit 2925263
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diff --git a/cfaforecastrenewalww/man/example_df.Rd b/cfaforecastrenewalww/man/example_df.Rd
diff --git a/cfaforecastrenewalww/man/param_df.Rd b/cfaforecastrenewalww/man/param_df.Rd
diff --git a/model_definition.md b/model_definition.md
diff --git a/output/forecasts/2024-04-01/2024-04-01.tsv b/output/forecasts/2024-04-01/2024-04-01.tsv
diff --git a/output/forecasts/2024-04-01/metadata.yaml b/output/forecasts/2024-04-01/metadata.yaml
@@ -0,0 +1,14 @@
+States without wastewaster data:
+- - MS
+  - ND
+  - PR
+States with insufficient wastewater data:
+- DC
+States we chose to use hospital admissions only model on:
+- - CA
+  - GA
+  - IL
+  - NH
+  - NY
+  - SC
+States we chose to not submit a forecast for: None
diff --git a/output/forecasts/2024-04-01/wastewater_metadata_table.tsv b/output/forecasts/2024-04-01/wastewater_metadata_table.tsv
@@ -0,0 +1,53 @@
+location	additional_notes
+AK	None
+AL	None
+AR	None
+AZ	None
+CA	Hospital admissions only model was run due to either issues with input data or model
+CO	None
+CT	None
+DC	None
+DE	None
+FL	None
+GA	Hospital admissions only model was run due to either issues with input data or model
+HI	None
+IA	None
+ID	None
+IL	Hospital admissions only model was run due to either issues with input data or model
+IN	None
+KS	None
+KY	None
+LA	None
+MA	None
+MD	None
+ME	None
+MI	None
+MN	None
+MO	None
+MS	None
+MT	None
+NC	None
+ND	None
+NE	None
+NH	Hospital admissions only model was run due to either issues with input data or model
+NJ	None
+NM	None
+NV	None
+NY	Hospital admissions only model was run due to either issues with input data or model
+OH	None
+OK	None
+OR	None
+PA	None
+PR	None
+RI	None
+SC	Hospital admissions only model was run due to either issues with input data or model
+SD	None
+TN	None
+TX	None
+UT	None
+VA	None
+VT	None
+WA	None
+WI	None
+WV	None
+WY	None
diff --git a/src/write_config.R b/src/write_config.R
@@ -107,21 +107,6 @@ write_config <- function(run_id,
       to = lubridate::ymd("2024-02-29"),
       by = "days"
     ), # NM exclude repeats
-    seq(
-      from = lubridate::ymd("2024-02-27"),
-      to = lubridate::ymd("2024-03-02"),
-      by = "days"
-    ), # TX anomalies
-    seq(
-      from = lubridate::ymd("2024-02-27"),
-      to = lubridate::ymd("2024-03-02"),
-      by = "days"
-    ), # US exclusions bc of TX anomalies
-    seq(
-      from = lubridate::ymd("2024-03-18"),
-      to = lubridate::ymd("2024-03-19"),
-      by = "days"
-    ), # NJ repeats
     seq(
       from = lubridate::ymd("2024-03-16"),
       to = lubridate::ymd("2024-03-22"),
@@ -131,9 +116,6 @@ write_config <- function(run_id,
 
   states_for_hosp_removal <- c(
     rep("NM", 3),
-    rep("TX", 5),
-    rep("US", 5),
-    rep("NJ", 2),
     rep("OR", 7)
   )