V1.11 2024 04 15 run (#18)

CDCgov · Apr 15, 2024 · 82f1bb7 · 82f1bb7
1 parent cf81474
commit 82f1bb7
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Showing 65 changed files with 38,243 additions and 62 deletions.
diff --git a/.github/workflows/r-cmd-check.yaml b/.github/workflows/r-cmd-check.yaml
@@ -1,12 +1,34 @@
-name: R CMD check project package
+name: R CMD check project packages
 
 on:
   pull_request:
   push:
     branches: [main]
 
 jobs:
-  build-and-check:
+  check-eval:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/checkout@v4
+    - uses: r-lib/actions/setup-r@v2
+      with:
+        r-version: 'release'
+        use-public-rspm: true
+        extra-repositories: 'https://mc-stan.org/r-packages/'
+    - name: "Set up dependencies for wweval"
+      uses: r-lib/actions/setup-r-dependencies@v2
+      with:
+        working-directory: wweval
+        needs: check
+    - name: "Install cmdstan via cmdstanr"
+      uses: ./.github/actions/install-cmdstan
+    - name: "Check wweval package"
+      uses: r-lib/actions/check-r-package@v2
+      with:
+        working-directory: wweval
+
+  check-ww:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
@@ -15,13 +37,15 @@ jobs:
         r-version: 'release'
         use-public-rspm: true
         extra-repositories: 'https://mc-stan.org/r-packages/'
-    - uses: r-lib/actions/setup-r-dependencies@v2
+    - name: "Set up dependencies for cfaforecastrenewalww"
+      uses: r-lib/actions/setup-r-dependencies@v2
       with:
         working-directory: cfaforecastrenewalww
         needs: check
     - name: "Install cmdstan via cmdstanr"
       uses: ./.github/actions/install-cmdstan
-    - uses: r-lib/actions/check-r-package@v2
+    - name: "check cfaforecastrenewalww package"
+      uses: r-lib/actions/check-r-package@v2
       with:
         working-directory: cfaforecastrenewalww
         error-on: '"error"'
diff --git a/_targets.R b/_targets.R
@@ -291,7 +291,8 @@ list(
     command = get_plot_draws(grouped_df_id,
       "pred_hosp",
       figure_output_subdirectory,
-      show_calibration_data = FALSE
+      show_calibration_data = FALSE,
+      show_median = TRUE
     ),
     pattern = map(grouped_df_id),
     iteration = "list",
@@ -524,7 +525,8 @@ list(
     command = get_plot_draws(grouped_df,
       "pred_hosp",
       figure_output_subdirectory,
-      show_calibration_data = FALSE
+      show_calibration_data = FALSE,
+      show_median = TRUE
     ),
     pattern = map(grouped_df),
     iteration = "list",
@@ -683,7 +685,8 @@ list(
     command = get_plot_draws(grouped_df_sa,
       "pred_hosp",
       figure_output_subdirectory,
-      show_calibration_data = FALSE
+      show_calibration_data = FALSE,
+      show_median = TRUE
     ),
     pattern = map(grouped_df_sa),
     iteration = "list",
@@ -776,7 +779,8 @@ list(
       "pred_hosp",
       grouping_var = "model_type",
       figure_output_subdirectory,
-      show_calibration_data = FALSE
+      show_calibration_data = FALSE,
+      show_median = TRUE
     ),
     pattern = map(grouped_df_comb),
     iteration = "list",