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Add epidemic phase figure as a check for how its working #110

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@kaitejohnson kaitejohnson commented Jul 22, 2024

This PR adds an additional figure (that we might want to reformat if we were to really put in the supplement) that I am using to check how the epidemic phase classification is working. As expected, I don't think this is exactly what we want because it is telling us about the trend in infection dynamics currently, which is about 2 weeks on average earlier than what we see in the hospital admissions signal. See fig here.

Not for this PR necessarily, but we should probably have a discussion about changing this algorithm a bit @zsusswein tagging you for awareness/thoughts since you suspected this would be an issue...

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Closing this bc its in the #112

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