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V1.9 2024 04 01 run #15

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Apr 1, 2024
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V1.9 2024 04 01 run #15

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210e938
changes to codebase to reflect 2024-04-01 run
kaitejohnson Apr 1, 2024
7bf3c54
add forecasts
kaitejohnson Apr 1, 2024
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10 changes: 5 additions & 5 deletions cfaforecastrenewalww/man/example_df.Rd
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7 changes: 4 additions & 3 deletions cfaforecastrenewalww/man/param_df.Rd
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86 changes: 44 additions & 42 deletions model_definition.md
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34,133 changes: 34,133 additions & 0 deletions output/forecasts/2024-04-01/2024-04-01.tsv
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14 changes: 14 additions & 0 deletions output/forecasts/2024-04-01/metadata.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
States without wastewaster data:
- - MS
- ND
- PR
States with insufficient wastewater data:
- DC
States we chose to use hospital admissions only model on:
- - CA
- GA
- IL
- NH
- NY
- SC
States we chose to not submit a forecast for: None
53 changes: 53 additions & 0 deletions output/forecasts/2024-04-01/wastewater_metadata_table.tsv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
location additional_notes
AK None
AL None
AR None
AZ None
CA Hospital admissions only model was run due to either issues with input data or model
CO None
CT None
DC None
DE None
FL None
GA Hospital admissions only model was run due to either issues with input data or model
HI None
IA None
ID None
IL Hospital admissions only model was run due to either issues with input data or model
IN None
KS None
KY None
LA None
MA None
MD None
ME None
MI None
MN None
MO None
MS None
MT None
NC None
ND None
NE None
NH Hospital admissions only model was run due to either issues with input data or model
NJ None
NM None
NV None
NY Hospital admissions only model was run due to either issues with input data or model
OH None
OK None
OR None
PA None
PR None
RI None
SC Hospital admissions only model was run due to either issues with input data or model
SD None
TN None
TX None
UT None
VA None
VT None
WA None
WI None
WV None
WY None
18 changes: 0 additions & 18 deletions src/write_config.R
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Original file line number Diff line number Diff line change
Expand Up @@ -107,21 +107,6 @@ write_config <- function(run_id,
to = lubridate::ymd("2024-02-29"),
by = "days"
), # NM exclude repeats
seq(
from = lubridate::ymd("2024-02-27"),
to = lubridate::ymd("2024-03-02"),
by = "days"
), # TX anomalies
seq(
from = lubridate::ymd("2024-02-27"),
to = lubridate::ymd("2024-03-02"),
by = "days"
), # US exclusions bc of TX anomalies
seq(
from = lubridate::ymd("2024-03-18"),
to = lubridate::ymd("2024-03-19"),
by = "days"
), # NJ repeats
seq(
from = lubridate::ymd("2024-03-16"),
to = lubridate::ymd("2024-03-22"),
Expand All @@ -131,9 +116,6 @@ write_config <- function(run_id,

states_for_hosp_removal <- c(
rep("NM", 3),
rep("TX", 5),
rep("US", 5),
rep("NJ", 2),
rep("OR", 7)
)

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