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Quick fix of the hospital admissions post processing #99

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merged 2 commits into from
Jul 11, 2024
Merged

Quick fix of the hospital admissions post processing #99

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b85f6c2
save the full hospital admissiosn quantiles for the hosp model, not j…
kaitejohnson Jul 11, 2024
7a91ae7
fix fxn arg in targets
kaitejohnson Jul 11, 2024
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4 changes: 2 additions & 2 deletions _targets_eval_postprocessing.R
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Original file line number Diff line number Diff line change
Expand Up @@ -179,14 +179,14 @@ combined_targets <- list(
name = convergence_df_ww,
command = get_convergence_df(
all_flags_ww,
default_scenario = "status_quo"
scenario = "status_quo"
) |>
dplyr::rename(any_flags_ww = any_flags)
),
tar_target(
name = convergence_df_hosp,
command = get_convergence_df(all_flags_hosp,
default_scenario = "no_wastewater"
scenario = "no_wastewater"
) |>
dplyr::rename(any_flags_hosp = any_flags)
),
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2 changes: 1 addition & 1 deletion wweval/R/eval_post_process.R
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Expand Up @@ -356,7 +356,7 @@ eval_post_process_hosp <- function(config_index,
# Save forecasted quantiles locally as well as via
# targets caching just for backup
save_table(
data_to_save = hosp_model_quantiles,
data_to_save = full_hosp_model_quantiles,
type_of_output = "quantiles",
output_dir = output_dir,
scenario = "no_wastewater",
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