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CEA-COSMIC · Jan 11, 2024 · 4ddb2e1 · 4ddb2e1
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: b343ffdf7fc6ce6acddca469eaa0a82e
+config: 2345b6a7863a9e0d6ce1276854626540
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/auto_examples/pysap-astro/plot_galaxy_deconvolution.doctree b/.doctrees/auto_examples/pysap-astro/plot_galaxy_deconvolution.doctree
diff --git a/.doctrees/auto_examples/pysap-astro/plot_galaxy_denoising.doctree b/.doctrees/auto_examples/pysap-astro/plot_galaxy_denoising.doctree
diff --git a/.doctrees/auto_examples/pysap-astro/sg_execution_times.doctree b/.doctrees/auto_examples/pysap-astro/sg_execution_times.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.doctree b/.doctrees/auto_examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/CalibrationlessReconstruction_OWL_Cartesian.doctree b/.doctrees/auto_examples/pysap-mri/CalibrationlessReconstruction_OWL_Cartesian.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/GPU_NonCartesian_Pipe_DensityCompensation.doctree b/.doctrees/auto_examples/pysap-mri/GPU_NonCartesian_Pipe_DensityCompensation.doctree
diff --git a/...trees/auto_examples/pysap-mri/GPU_NonCartesian_gpuNUFFT_SENSE_DensityCompensation.doctree b/...trees/auto_examples/pysap-mri/GPU_NonCartesian_gpuNUFFT_SENSE_DensityCompensation.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/SelfCalibrationReconstruction_Cartesian.doctree b/.doctrees/auto_examples/pysap-mri/SelfCalibrationReconstruction_Cartesian.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction.doctree b/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction_3d.doctree b/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction_3d.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction_auto_threshold.doctree b/.doctrees/auto_examples/pysap-mri/cartesian_reconstruction_auto_threshold.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/gridsearch_launch.doctree b/.doctrees/auto_examples/pysap-mri/gridsearch_launch.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/non_cartesian_reconstruction.doctree b/.doctrees/auto_examples/pysap-mri/non_cartesian_reconstruction.doctree
diff --git a/.doctrees/auto_examples/pysap-mri/sg_execution_times.doctree b/.doctrees/auto_examples/pysap-mri/sg_execution_times.doctree
diff --git a/.doctrees/auto_examples/pysap/plot_basics.doctree b/.doctrees/auto_examples/pysap/plot_basics.doctree
diff --git a/.doctrees/auto_examples/pysap/sg_execution_times.doctree b/.doctrees/auto_examples/pysap/sg_execution_times.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
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diff --git a/_images/sphx_glr_gridsearch_launch_thumb.png b/_images/sphx_glr_gridsearch_launch_thumb.png
diff --git a/_images/sphx_glr_non_cartesian_reconstruction_001.png b/_images/sphx_glr_non_cartesian_reconstruction_001.png
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diff --git a/_images/sphx_glr_non_cartesian_reconstruction_thumb.png b/_images/sphx_glr_non_cartesian_reconstruction_thumb.png
diff --git a/_images/sphx_glr_plot_galaxy_deconvolution_002.png b/_images/sphx_glr_plot_galaxy_deconvolution_002.png
diff --git a/_images/sphx_glr_plot_galaxy_deconvolution_002_2_0x.png b/_images/sphx_glr_plot_galaxy_deconvolution_002_2_0x.png
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diff --git a/_images/sphx_glr_plot_galaxy_deconvolution_004_2_0x.png b/_images/sphx_glr_plot_galaxy_deconvolution_004_2_0x.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_002.png b/_images/sphx_glr_plot_galaxy_denoising_002.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_002_2_0x.png b/_images/sphx_glr_plot_galaxy_denoising_002_2_0x.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_003.png b/_images/sphx_glr_plot_galaxy_denoising_003.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_003_2_0x.png b/_images/sphx_glr_plot_galaxy_denoising_003_2_0x.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_004.png b/_images/sphx_glr_plot_galaxy_denoising_004.png
diff --git a/_images/sphx_glr_plot_galaxy_denoising_004_2_0x.png b/_images/sphx_glr_plot_galaxy_denoising_004_2_0x.png
diff --git a/_sources/auto_examples/pysap-astro/plot_galaxy_deconvolution.rst.txt b/_sources/auto_examples/pysap-astro/plot_galaxy_deconvolution.rst.txt
diff --git a/_sources/auto_examples/pysap-astro/plot_galaxy_denoising.rst.txt b/_sources/auto_examples/pysap-astro/plot_galaxy_denoising.rst.txt
@@ -288,7 +288,7 @@ Finally, we can show the residual.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  3.840 seconds)
+   **Total running time of the script:** ( 0 minutes  3.865 seconds)
 
 
 .. _sphx_glr_download_auto_examples_pysap-astro_plot_galaxy_denoising.py:

diff --git a/_sources/auto_examples/pysap-astro/sg_execution_times.rst.txt b/_sources/auto_examples/pysap-astro/sg_execution_times.rst.txt
@@ -5,10 +5,10 @@
 
 Computation times
 =================
-**00:38.523** total execution time for **auto_examples_pysap-astro** files:
+**00:51.987** total execution time for **auto_examples_pysap-astro** files:
 
 +-----------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_pysap-astro_plot_galaxy_deconvolution.py` (``plot_galaxy_deconvolution.py``) | 00:34.683 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_pysap-astro_plot_galaxy_deconvolution.py` (``plot_galaxy_deconvolution.py``) | 00:48.122 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_pysap-astro_plot_galaxy_denoising.py` (``plot_galaxy_denoising.py``)         | 00:03.840 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_pysap-astro_plot_galaxy_denoising.py` (``plot_galaxy_denoising.py``)         | 00:03.865 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------+-----------+--------+
diff --git a/...rces/auto_examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.rst.txt b/...rces/auto_examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.rst.txt
@@ -51,6 +51,12 @@ Package import
     import matplotlib.pyplot as plt
 
 
+
+
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 29-30
 
 Loading input data
@@ -65,6 +71,12 @@ Loading input data
     mask = get_sample_data("cartesian-mri-mask").data
 
 
+
+
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 36-37
 
 View Input
@@ -82,6 +94,26 @@ View Input
     plt.show()
 
 
+
+
+.. image-sg:: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_001.png
+   :alt: MRI Data, K-space Sampling Mask
+   :srcset: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_001.png, /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_001_2_0x.png 2.0x
+   :class: sphx-glr-single-img
+
+
+.. rst-class:: sphx-glr-script-out
+
+ Out:
+
+ .. code-block:: none
+
+    /volatile/Chaithya/actions-runner/_work/pysap/pysap/examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.py:43: UserWarning: FigureCanvasAgg is non-interactive, and thus cannot be shown
+      plt.show()
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 46-52
 
 Generate the kspace
@@ -102,6 +134,12 @@ We then reconstruct the zero order solution as a baseline
     kspace_obs = fourier_op.op(cartesian_ref_image)
 
 
+
+
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 59-60
 
 Zero order solution
@@ -117,6 +155,26 @@ Zero order solution
     plt.show()
 
 
+
+
+.. image-sg:: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_002.png
+   :alt: Zero Order Solution : SSIM = 0.83
+   :srcset: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_002.png, /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_002_2_0x.png 2.0x
+   :class: sphx-glr-single-img
+
+
+.. rst-class:: sphx-glr-script-out
+
+ Out:
+
+ .. code-block:: none
+
+    /volatile/Chaithya/actions-runner/_work/pysap/pysap/examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.py:64: UserWarning: FigureCanvasAgg is non-interactive, and thus cannot be shown
+      plt.show()
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 67-72
 
 FISTA optimization
@@ -147,6 +205,22 @@ The cost function is set to Proximity Cost + Gradient Cost
         verbose=1,
     )
 
+
+
+
+.. rst-class:: sphx-glr-script-out
+
+ Out:
+
+ .. code-block:: none
+
+    WARNING: Making input data immutable.
+    Lipschitz constant is 1.0999999344348907
+    The lipschitz constraint is satisfied
+
+
+
+
 .. GENERATED FROM PYTHON SOURCE LINES 90-91
 
 Run the FISTA reconstruction and view results
@@ -167,9 +241,46 @@ Run the FISTA reconstruction and view results
     plt.show()
 
 
+
+.. image-sg:: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_003.png
+   :alt: Iterative Reconstruction : SSIM = 0.89
+   :srcset: /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_003.png, /auto_examples/pysap-mri/images/sphx_glr_CalibrationlessReconstruction_GL_Cartesian_003_2_0x.png 2.0x
+   :class: sphx-glr-single-img
+
+
+.. rst-class:: sphx-glr-script-out
+
+ Out:
+
+ .. code-block:: none
+
+    WARNING: Making input data immutable.
+     - mu:  6e-08
+     - lipschitz constant:  1.0999999344348907
+     - data:  (512, 512)
+     - wavelet:  <mri.operators.linear.wavelet.WaveletN object at 0x7f130e919540> - 4
+     - max iterations:  100
+     - image variable shape:  (512, 512)
+     - alpha variable shape:  (32, 291721)
+    ----------------------------------------
+    Starting optimization...
+      0%|          | 0/100 [00:00<?, ?it/s]      1%|1         | 1/100 [00:02<03:31,  2.14s/it]      2%|2         | 2/100 [00:04<03:29,  2.14s/it]      3%|3         | 3/100 [00:06<03:27,  2.13s/it]      4%|4         | 4/100 [00:08<03:24,  2.13s/it]      5%|5         | 5/100 [00:10<03:22,  2.13s/it]      6%|6         | 6/100 [00:12<03:20,  2.13s/it]      7%|7         | 7/100 [00:14<03:18,  2.13s/it]      8%|8         | 8/100 [00:17<03:15,  2.12s/it]      9%|9         | 9/100 [00:19<03:12,  2.12s/it]     10%|#         | 10/100 [00:21<03:10,  2.12s/it]     11%|#1        | 11/100 [00:23<03:08,  2.12s/it]     12%|#2        | 12/100 [00:25<03:06,  2.11s/it]     13%|#3        | 13/100 [00:27<03:03,  2.11s/it]     14%|#4        | 14/100 [00:29<03:02,  2.12s/it]     15%|#5        | 15/100 [00:31<02:59,  2.12s/it]     16%|#6        | 16/100 [00:33<02:58,  2.12s/it]     17%|#7        | 17/100 [00:36<02:55,  2.11s/it]     18%|#8        | 18/100 [00:38<02:53,  2.11s/it]     19%|#9        | 19/100 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+     - final iteration number:  100
+     - final log10 cost value:  6.0
+     - converged:  False
+    Done.
+    Execution time:  211.9147574151866  seconds
+    ----------------------------------------
+    /volatile/Chaithya/actions-runner/_work/pysap/pysap/examples/pysap-mri/CalibrationlessReconstruction_GL_Cartesian.py:100: UserWarning: FigureCanvasAgg is non-interactive, and thus cannot be shown
+      plt.show()
+
+
+
+
+
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
+   **Total running time of the script:** ( 4 minutes  25.283 seconds)
 
 
 .. _sphx_glr_download_auto_examples_pysap-mri_CalibrationlessReconstruction_GL_Cartesian.py: