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McGill COVID19 Projects Documentation

The current build of the documentation for all COVID-related projects can be found here

Viral Sequencing Pipeline Information:

  • Illumina:
    • Pipeline repository: source code for version 1.0 can be found here.
    • Documentation: documentation page found here.
  • Nanopore:
    • Pipeline repository: we use a clone of ARTIC Network pipeline v1.1.0-rc1.
    • Documentation: documentation page found here.

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McGill SARS-CoV2 Documentation

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  • Python 81.4%
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