CU-86964zm4d fix preprocessing #1317
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| max-parallel: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-dev.txt | |
| - name: Check types | |
| run: | | |
| python -m mypy --follow-imports=normal medcat | |
| - name: Lint | |
| run: | | |
| flake8 medcat | |
| - name: Test | |
| run: | | |
| all_files=$(git ls-files | grep '^tests/.*\.py$' | grep -v '/__init__\.py$' | sed 's/\.py$//' | sed 's/\//./g') | |
| num_files=$(echo "$all_files" | wc -l) | |
| midpoint=$((num_files / 2)) | |
| first_half_nl=$(echo "$all_files" | head -n $midpoint) | |
| second_half_nl=$(echo "$all_files" | tail -n +$(($midpoint + 1))) | |
| timeout 25m python -m unittest ${first_half_nl[@]} | |
| timeout 25m python -m unittest ${second_half_nl[@]} | |
| - name: Regression | |
| run: source tests/resources/regression/run_regression.sh | |
| - name: Get the latest release version | |
| id: get_latest_release | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const latestRelease = await github.rest.repos.getLatestRelease({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo | |
| }); | |
| core.setOutput('latest_version', latestRelease.data.tag_name); | |
| - name: Make sure there's no deprecated methods that should be removed. | |
| # only run this for master -> production PR. I.e just before doing a release. | |
| if: github.event.pull_request.base.ref == 'main' && github.event.pull_request.head.ref == 'production' | |
| env: | |
| VERSION: ${{ steps.get_latest_release.outputs.latest_version }} | |
| run: | | |
| python tests/check_deprecations.py "$VERSION" --next-version --remove-prefix | |
| publish-to-test-pypi: | |
| if: | | |
| github.repository == 'CogStack/MedCAT' && | |
| github.ref == 'refs/heads/master' && | |
| github.event_name == 'push' && | |
| startsWith(github.ref, 'refs/tags') != true | |
| runs-on: ubuntu-20.04 | |
| timeout-minutes: 45 | |
| concurrency: publish-to-test-pypi | |
| needs: [build] | |
| steps: | |
| - name: Checkout master | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: 'master' | |
| fetch-depth: 0 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install pypa/build | |
| run: >- | |
| python -m | |
| pip install | |
| build | |
| --user | |
| - name: Configure the version | |
| run: >- | |
| sed --in-place | |
| "s/node-and-date/no-local-version/g" | |
| setup.py | |
| - name: Build a binary wheel and a source tarball | |
| run: >- | |
| python -m | |
| build | |
| --sdist | |
| --wheel | |
| --outdir dist/ | |
| . | |
| - name: Publish dev distribution to Test PyPI | |
| uses: pypa/[email protected] | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| continue-on-error: true |