outlier removal of plots added #3


	name: Publish Shiny App

	on:
	push:
	branches: [main, master]
	workflow_dispatch:

	permissions:
	contents: read
	pages: write
	id-token: write

	jobs:
	build-and-deploy:
	runs-on: ubuntu-latest

	steps:
	# Step 1: Check out the repository
	- name: Check out repository
	uses: actions/checkout@v4

	# Step 2: Install system dependencies
	- name: Install system dependencies (libarchive-dev and libcurl4-openssl-dev)
	run: sudo apt-get update && sudo apt-get install -y libarchive-dev libcurl4-openssl-dev

	# Step 3: Set up R
	- name: Set up R
	uses: r-lib/actions/setup-r@v2

	# Step 4: Install Shinylive
	# - name: Install Shinylive
	# run: \|
	# Rscript -e 'install.packages("shinylive", repos = "https://cloud.r-project.org")'

	- name: "Setup R dependencies"
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	packages:
	cran::[email protected]
	any::shiny
	any::DT
	any::bslib
	any::broom
	any::ggplot2
	any::base64enc
	any::shinyjs
	any::mgcv
	any::RColorBrewer
	any::tidyr
	any::purrr
	any::agricolae
	any::drc
	any::cowplot
	any::MASS
	any::Matrix
	any::equatiomatic
	any::openxlsx
	any::car
	any::httr
	any::jose
	any::openssl

	# Step 5: Export Shiny app as a static website
	- name: Export Shiny app
	run: \|
	Rscript -e 'shinylive::export("./app", "_site")'

	# Step 6: Upload artifact for deployment
	- name: Upload Pages artifact
	uses: actions/upload-pages-artifact@v2
	with:
	path: _site
	retention-days: 1

	# Step 7: Deploy to GitHub Pages
	- name: Deploy to GitHub Pages
	uses: actions/deploy-pages@v2

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