Updated outlier detection for dose response analysis. Now when an out… #4
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| name: Publish Shiny App | |
| on: | |
| push: | |
| branches: [main, master] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| build-and-deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Step 1: Check out the repository | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Step 2: Install system dependencies | |
| - name: Install system dependencies (libarchive-dev and libcurl4-openssl-dev) | |
| run: sudo apt-get update && sudo apt-get install -y libarchive-dev libcurl4-openssl-dev | |
| # Step 3: Set up R | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| # Step 4: Install Shinylive | |
| # - name: Install Shinylive | |
| # run: | | |
| # Rscript -e 'install.packages("shinylive", repos = "https://cloud.r-project.org")' | |
| - name: "Setup R dependencies" | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | |
| cran::[email protected] | |
| any::shiny | |
| any::DT | |
| any::bslib | |
| any::broom | |
| any::ggplot2 | |
| any::base64enc | |
| any::shinyjs | |
| any::mgcv | |
| any::RColorBrewer | |
| any::tidyr | |
| any::purrr | |
| any::agricolae | |
| any::drc | |
| any::cowplot | |
| any::MASS | |
| any::Matrix | |
| any::equatiomatic | |
| any::openxlsx | |
| any::car | |
| any::httr | |
| any::jose | |
| any::openssl | |
| # Step 5: Export Shiny app as a static website | |
| - name: Export Shiny app | |
| run: | | |
| Rscript -e 'shinylive::export("./app", "_site")' | |
| # Step 6: Upload artifact for deployment | |
| - name: Upload Pages artifact | |
| uses: actions/upload-pages-artifact@v2 | |
| with: | |
| path: _site | |
| retention-days: 1 | |
| # Step 7: Deploy to GitHub Pages | |
| - name: Deploy to GitHub Pages | |
| uses: actions/deploy-pages@v2 | |