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Extending chemotion_ELN with Repository functions
In short: - data submission feature added to user ELN page - Review page for internal reviewing - Public page to browse published sample/reaction data Contributors: Chia-Lin Lin Pei-Chi Huang Pierre Tremouilhac
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Original file line number | Diff line number | Diff line change |
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@@ -1,16 +1,7 @@ | ||
SFTP_HOST=sftp | ||
SFTP_PORT=22 | ||
SFTP_UPLOAD_FOLDER=uploads | ||
SFTP_USER=sftp_test | ||
SFTP_PASSWORD=sftp_test | ||
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MESSAGE_ENABLE=false | ||
MESSAGE_AUTO_INTERNAL=6000 | ||
MESSAGE_IDLE_TIME=12 | ||
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# JWT key for novnc target encryption | ||
NOVNC_SECRET='secret' | ||
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# Allow unconfirmed email: leave blank for always, or set a number of days (integer); | ||
# also set 0 to have email being confirmed before first sign in. | ||
DEVISE_ALLOW_UNCONFIRMED='' | ||
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@@ -22,3 +13,31 @@ DEVISE_DISABLED_SIGN_UP='' | |
# Any new account to be inactive by default => only admin can (de)activate | ||
DEVISE_NEW_ACCOUNT_INACTIVE=false | ||
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# email of the Repository user | ||
SYS_EMAIL='[email protected]' | ||
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# id of public collection | ||
PUBLIC_COLL_ID=0 | ||
SCHEME_ONLY_REACTIONS_COLL_ID=0 | ||
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DOI_SYMBOL='DOI_SYMBOL' | ||
DOI_PWD='DOI_PWD' | ||
DOI_PREFIX='10.XXXX' | ||
DOI_DOMAIN='DOI.DOMA.IN' | ||
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PUBCHEM_LOGIN='PUBCHEM_LOGIN' | ||
PUBCHEM_PASSWORD='PUBCHEM_PW' | ||
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PUBLISH_MODE='staging' | ||
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ARTICLE_PATH='public/newsroom/' | ||
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# user ids of howto editors | ||
# HOWTO_EDITOR='1,2,3' | ||
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# user ids of news editors | ||
# NEWSROOM_EDITOR='1,2,3' | ||
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# user ids of reviewers | ||
# REVIEWERS='1,2,3' |
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@@ -35,6 +35,8 @@ gem 'bibtex-ruby' | |
# state machine | ||
gem 'aasm' | ||
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gem 'bootsnap', require: false | ||
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group :development do | ||
gem 'sdoc', '~> 0.4.0', group: :doc | ||
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@@ -91,6 +93,7 @@ gem 'kaminari-grape' | |
gem "rdkit_chem", git: "https://github.com/CamAnNguyen/rdkit_chem" | ||
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gem 'api-pagination' | ||
gem 'rack-cors' | ||
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gem 'pundit' | ||
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@@ -150,8 +153,10 @@ gem 'coveralls', require: false | |
# to compile from github/openbabel/openbabel master | ||
# gem 'openbabel', '2.4.1.2', git: 'https://github.com/ComPlat/openbabel-gem' | ||
# to compile from github/openbabel/openbabel branch openbabel-2-4-x | ||
# gem 'openbabel', '2.4.90.1', git: 'https://github.com/ComPlat/openbabel-gem' | ||
gem 'openbabel', '2.4.90.3', git: 'https://github.com/ComPlat/openbabel-gem.git', branch: 'hot-fix-svg' | ||
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gem 'barby' | ||
gem 'prawn' | ||
gem 'prawn-svg' | ||
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@@ -163,13 +168,14 @@ gem 'swot', git: 'https://github.com/leereilly/swot.git', branch: 'master', | |
ref: 'bfe392b4cd52f62fbc1d83156020275719783dd1' | ||
# gem 'gman', '~> 7.0.3' | ||
gem 'activejob-status' | ||
gem 'moneta' | ||
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group :development, :test do | ||
gem 'binding_of_caller' | ||
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gem 'annotate' | ||
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gem 'mailcatcher', '0.7.1' | ||
# gem 'mailcatcher', '0.7.1' | ||
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# Call 'byebug' anywhere in the code to stop execution | ||
# and get a debugger console | ||
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@@ -230,4 +236,6 @@ if File.exists?(eln_plugin) | |
eval_gemfile eln_plugin | ||
end | ||
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#gem 'reposit', git: '[email protected]:complat/reposit.git' | ||
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#### |
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