fixing workflow #52

Workflow file for this run

.github/workflows/build_deb_pkg.yml at f2e7fc5

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Ubuntu/Debian build

	on:
	push:
	tags:
	- '*'
	env:
	APPLICATION_NAME: piranhaGUI

	permissions:
	contents: write

	defaults:
	run:
	shell: bash -l {0}

	jobs:

	prepare_build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	# - name: Set up Python 3.10
	# uses: actions/setup-python@v3
	# with:
	# python-version: "3.10"
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: false
	environment-file: artifice/environment.yml
	activate-environment: artifice
	channels: conda-forge,defaults
	miniforge-version: latest
	auto-activate-base: false
	# - name: Install dependencies
	# run: \|
	# echo ls
	# python -m pip install --upgrade pip
	# # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	# # $CONDA is an environment variable pointing to the root of the miniconda directory
	# $CONDA/bin/conda env update --file artifice/environment.yml --name base
	#- name: Lint with flake8
	# run: \|
	# $CONDA/bin/conda install flake8
	# # stop the build if there are Python syntax errors or undefined names
	# $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	# $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistic
	#- name: Test with pytest
	# run: \|
	# pytest
	- name: create pip requirements file (for building deb package)
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	pip freeze > artifice/requirements.txt

	- name: increment version number
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	python artifice/update_version_number.py ${{ github.ref_name }} piranhaGUI

	- name: set git config
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Action"

	- name: stage changed files
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	git add *

	- name: commit changes
	id: commit
	continue-on-error: true
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	git commit -m"incrementing version number"

	- name: set git config
	env:
	GITHUB_TOKEN: ${{ github.token }}
	run: \|
	git fetch origin main

	- name: push changes to main
	env:
	GITHUB_TOKEN: ${{ github.token }}
	if: steps.commit.outcome == 'success'
	run: \|
	git push origin HEAD:main

	build_deb_release:
	needs: [prepare_build]
	runs-on: ubuntu-latest
	outputs:
	release_url: ${{ steps.create_release.outputs.upload_url }}

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: "3.10"

	- name: make sure up to date
	run: \|
	git pull origin main

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	# if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	pip install -r artifice/requirements.txt

	- name: pull piranha docker image
	run: \|
	docker pull polionanopore/piranha:latest

	- name: save piranha docker image to file
	working-directory: ./artifice/
	run: \|
	mkdir piranha_image_file
	docker save --output piranha_image_file/piranha.tar polionanopore/piranha:latest

	- name: Temporarily save piranha docker image
	uses: actions/upload-artifact@v4
	with:
	name: piranha.tar
	path: artifice/piranha_image_file/piranha.tar
	retention-days: 1

	- name: build deb package
	working-directory: ./artifice/linux_build/
	run: \|
	source create_piranha_package

	- name: release
	uses: actions/create-release@v1
	id: create_release
	with:
	draft: false
	prerelease: true
	release_name: ${{ env.APPLICATION_NAME }} v${{ github.ref_name }}
	tag_name: ${{ github.ref_name }}
	body_path: ''
	env:
	GITHUB_TOKEN: ${{ github.token }}

	- name: upload ubuntu/debian package
	uses: actions/upload-release-asset@v1
	env:
	GITHUB_TOKEN: ${{ github.token }}
	with:
	upload_url: ${{ steps.create_release.outputs.upload_url }}
	asset_path: artifice/linux_build/pkg_file/${{ env.APPLICATION_NAME }}_${{ github.ref_name }}.deb
	asset_name: ${{ env.APPLICATION_NAME }}_${{ github.ref_name }}.deb
	asset_content_type: application/vnd.debian.binary-package

	build_darwin_release:
	needs: [build_deb_release]
	runs-on: macos-13
	env:
	RELEASE_URL: ${{ needs.build_deb_release.outputs.release_url }}

	steps:
	- uses: actions/checkout@v4

	- name: make sure up to date
	run: \|
	git pull origin main

	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: false
	environment-file: artifice/environment.yml
	activate-environment: artifice
	channels: conda-forge,defaults
	miniforge-version: latest
	auto-activate-base: false

	- name: Retrieve saved piranha docker image
	uses: actions/download-artifact@v4
	with:
	name: piranha.tar
	path: artifice/resources/

	- name: build package
	working-directory: ./artifice/mac_build/pyinstaller_build/
	run: \|
	pyinstaller piranhaGUI.spec

	- name: compress macos app
	working-directory: ./artifice/mac_build/pyinstaller_build/dist/
	run: \|
	ditto -c -k --sequesterRsrc --keepParent --zlibCompressionLevel 9 ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}.app ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip

	- name: upload mac package
	uses: actions/upload-release-asset@v1
	env:
	GITHUB_TOKEN: ${{ github.token }}
	with:
	upload_url: ${{ env.RELEASE_URL }}
	asset_path: ./artifice/mac_build/pyinstaller_build/dist/${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip
	asset_name: ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip
	asset_content_type: application/zip

	build_win_release:
	needs: [build_deb_release]
	runs-on: windows-latest
	env:
	RELEASE_URL: ${{ needs.build_deb_release.outputs.release_url }}

	steps:
	- uses: actions/checkout@v4

	- name: make sure up to date
	run: \|
	git pull origin main

	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: false
	environment-file: artifice/environment.yml
	activate-environment: artifice
	channels: conda-forge,defaults
	miniforge-version: latest
	auto-activate-base: false

	- name: make dir for piranha image file
	working-directory: ./artifice
	run: \|
	mkdir piranha_image_file

	- name: Retrieve saved piranha docker image
	uses: actions/download-artifact@v4
	with:
	name: piranha.tar
	path: artifice/piranha_image_file/

	- name: build package
	working-directory: ./artifice/windows_build/
	run: \|
	./build_windows.bat

	- name: compile installer
	uses: Minionguyjpro/[email protected]
	with:
	path: ./artifice/windows_build/dist/piranhaGUI_installer.iss

	- name: upload windows installer
	uses: actions/upload-release-asset@v1
	env:
	GITHUB_TOKEN: ${{ github.token }}
	with:
	upload_url: ${{ env.RELEASE_URL }}
	asset_path: artifice/windows_build/dist/installer/${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_installer_windows.exe
	asset_name: ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_installer_windows.exe
	asset_content_type: application/vnd.microsoft.portable-executable

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fixing workflow #52

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fixing workflow #52

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Workflow file for this run