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Sherlock optimizations #264

Merged
merged 10 commits into from
Dec 3, 2024
Merged

Sherlock optimizations #264

merged 10 commits into from
Dec 3, 2024

Commits on Dec 2, 2024

  1. Reduce Sherlock resource requests for shorter queue times and lower i… 

    …mpact on fairshare score
    @thalassemia
    thalassemia committed Dec 2, 2024
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  2. No growth rate control builds runtime image for Jenkins optional feat… 

    …ures test so others do not have to
    @thalassemia
    thalassemia committed Dec 2, 2024
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Commits on Dec 3, 2024

  1. Build container image, run analyses, and create variants on Nextflow … 

    …orchestrator job on Sherlock
    @thalassemia
    thalassemia committed Dec 3, 2024
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  2. Use lab queue as well

    @thalassemia
    thalassemia committed Dec 3, 2024
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  3. Fix symlinking

    @thalassemia
    thalassemia committed Dec 3, 2024
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  4. Fix chromosomal segments

    @thalassemia
    thalassemia committed Dec 3, 2024
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  5. Remove whitespace

    @thalassemia
    thalassemia committed Dec 3, 2024
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  6. Run ParCa locally with Nextflow job on Sherlock

    @thalassemia
    thalassemia committed Dec 3, 2024
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  7. Remove unused imports

    @thalassemia
    thalassemia committed Dec 3, 2024
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  8. Ruff format style fixes

    @thalassemia
    thalassemia committed Dec 3, 2024
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