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@DEploid-dev

DEploid-dev

DEploid development repositories. See README (https://github.com/DEploid-dev/README) for more details.

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  1. README README Public

    DEploid-dev README

  2. DEploid DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

    C++ 20 10

  3. DEploid-Utilities DEploid-Utilities Public

    R 1 1

  4. DEploid-r DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and…

    C++ 1 3

  5. DEploid-vcf-lib DEploid-vcf-lib Public

    C++ 1

Repositories

Showing 10 of 16 repositories
  • DEploid-Utilities Public
    DEploid-dev/DEploid-Utilities’s past year of commit activity
    R 1 Apache-2.0 1 5 0 Updated Nov 24, 2024
  • DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

    DEploid-dev/DEploid’s past year of commit activity
    C++ 20 GPL-3.0 10 22 0 Updated Nov 24, 2024
  • DEploid-vcf-lib Public
    DEploid-dev/DEploid-vcf-lib’s past year of commit activity
    C++ 1 Apache-2.0 0 2 0 Updated Nov 24, 2024
  • DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…

    DEploid-dev/DEploid-r’s past year of commit activity
    C++ 1 GPL-3.0 3 14 0 Updated Oct 19, 2024
  • DEploid-Bestpractices-github-actions Public
    DEploid-dev/DEploid-Bestpractices-github-actions’s past year of commit activity
    0 Apache-2.0 0 2 0 Updated Jan 10, 2021
  • deploid-dev.github.io Public
    DEploid-dev/deploid-dev.github.io’s past year of commit activity
    0 0 0 0 Updated Jun 6, 2020
  • DEploid-Bestpractices-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Bestpractices-Benchmark-in_silico_field’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_field’s past year of commit activity
    R 0 Apache-2.0 1 2 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_lab_mixed_4s Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_lab_mixed_4s’s past year of commit activity
    R 0 Apache-2.0 1 0 0 Updated Aug 4, 2019
  • mixedIBD Public
    DEploid-dev/mixedIBD’s past year of commit activity
    TeX 0 0 0 0 Updated Jun 26, 2019
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