.Rbuildignore

# R project
^.*\.Rproj$
^\.Rproj\.user$
^\.Rhistory$
^tmp.*
^NEWS\.md$

# bash scripts
^tools$
^buildLocally.sh$
^cpHardCopies.sh$

# C.I.
^\.travis\.yml$
^appveyor\.yml$
^\.lintr$
lint-and-covr.Rout

# C++
\.o$
^DEploid.*.gz$
^.DEploid\/*$
^.*\.dirstamp$
^.*\.gcda$
^pf3k-dEploid.*$
src/DEploid/dEploid.cpp
src/DEploid/lasso/lassoOut.cpp
src/DEploid/gzstream/version
src/DEploid/export/mcmcIO.cpp
src/DEploid/gzstream/version
src/DEploid/lasso/.ci/
src/DEploid/lasso/.git
src/DEploid/lasso/.gitignore
src/DEploid/lasso/.travis.yml
src/DEploid/lasso/Brewfile
src/DEploid/lasso/COPYING
src/DEploid/lasso/Makefile.am
src/DEploid/lasso/README.md
src/DEploid/lasso/bootstrap
src/DEploid/lasso/configure.ac
src/DEploid/lasso/data/
src/DEploid/lasso/main.cpp
src/DEploid/lasso/tests/
src/DEploid/lasso/utility/
src/DEploid/lasso/version

\.gcno$

# extras
^extra$
^LICENSE$

# git
^\.gitignore$
^\.gitattributes$

# testthat
^tests/testthat/Rplots.pdf$
^tests/testthat/.*\.png$
^tests/testthat/.*\.html$

# vignettes/
^vignettes/commbine.sh
^vignettes/dEploid-Arguments.Rmd.src
^\.github$