adds submodules again #81
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| name: Python Package using Conda | |
| env: | |
| CIBW_TEST_REQUIRES: pytest | |
| CIBW_TEST_COMMAND: "pytest tests" | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| channels: conda-forge | |
| channel-priority: true | |
| activate-environment: tyssue | |
| environment-file: environment.yml | |
| - name: install tyssue github action | |
| shell: bash -l {0} | |
| run: pip install -v .[dev] | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| mamba install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| mamba install pytest | |
| make test |