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467 Open 375 Closed
467 Open 375 Closed
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Issues list

The problem of creating a large database
#897 opened Dec 17, 2024 by Mars-wang-24
Is kraken2 suitable for tNGS data?
#896 opened Dec 9, 2024 by zhuying412
rsync_from_ncbi.pl: FTP connection error: [Net::FTP] Timeout
#895 opened Dec 5, 2024 by DukeVimes
9
add species to PFP database
#894 opened Dec 4, 2024 by gabridinosauro
Processing of Data Slow
#893 opened Nov 27, 2024 by jhnath21
1
Database creation issues
#892 opened Nov 27, 2024 by jhnath21
1
processing paired reads
#891 opened Nov 27, 2024 by pedres
Empty fields in Kraken2 report file generated with version 2.1.3 and PlusPF database break Bracken downstream analysis
#888 opened Nov 12, 2024 by Seb-vb
3
High Memory Usage (1TB) for Creating a Kraken2 Database with 400GB of Genomes
#887 opened Nov 7, 2024 by florian-labadie
1
Unable to download Viral Library
#886 opened Nov 4, 2024 by catastrophicmuch99
First non-comment line in pluspf_20240904 inspect.txt is truncated
#885 opened Nov 1, 2024 by yeemey
Custom DB and custom taxonomy (GTDB or similar)
#884 opened Oct 18, 2024 by osvatic
11
kraken2 2.1.9 empty taxonomic level field in k2report
#883 opened Oct 4, 2024 by GODCALLMEGOD
1
18S, ITS, COI and chloroplast data analysis with kraken2
#882 opened Oct 2, 2024 by mars188
Kraken 2 finds spurious minimizers after ambiguous regions
#881 opened Sep 17, 2024 by jtnystrom
Viral Refseq outdated on more than year in comparison with ICTV VMR.39
#880 opened Sep 12, 2024 by igortru
Ambiguous bases being included in confidence score calculation
#878 opened Sep 11, 2024 by mcolpus
1
1
Support zstd input
#877 opened Sep 9, 2024 by mbhall88
Weather could provide a method for comparing multiple samples at once
#876 opened Aug 28, 2024 by PingWang7
3
Use of 16S Data with the Kraken2 Database
#875 opened Aug 28, 2024 by christopherwilliamlee
1
Parameters for database construction and classification with Nanopore v14 chemistry
#874 opened Aug 19, 2024 by rjsorr
How to Extract Specific Genomes or Full-Length rRNA Sequences from kraken2 PlusPF Database
#872 opened Aug 13, 2024 by chenlipeng2019
Is there a way to extract the kmers of a specific species from the Kraken2 database?
#871 opened Aug 9, 2024 by wangzhichao1990
make: *** src: No such file or directory. Stop.
#870 opened Aug 6, 2024 by lauraelf
3
Taxon assignment report not adding up to 100%
#868 opened Aug 5, 2024 by antantjuju
ProTip! Updated in the last three days: updated:>2024-12-14.