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Nuclei detection should be more stable across regions (#1100) #140

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Nuclei detection should be more stable across regions (#1100)

Nuclei detection should be more stable across regions (#1100) #140

Workflow file for this run

.github/workflows/ci.yml at e962155
name: Build
on:
push:
# pull_request:
# branches:
# - master
release:
types:
- created
# schedule:
# - cron: "0 7 * * 1"
concurrency:
group: ${{ github.ref }}
cancel-in-progress: ${{ github.ref != 'refs/heads/master' }}
jobs:
test:
runs-on: ubuntu-latest
# Runs can be slow, so don't use resources unless we mean to publish
if: github.repository == 'DigitalSlideArchive/HistomicsTK' && ( startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master' )
strategy:
matrix:
python: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install tox
run: |
pip install --upgrade pip
pip install tox tox-gh-actions
- name: Run tox
env:
PYTEST_ADDOPTS: "--durations=0 -vv"
run: |
tox
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- uses: nikeee/setup-pandoc@v1
- name: Install tox
run: |
pip install --upgrade pip
pip install tox
- name: Run tox for lint and docs
run: |
tox -e lint,docs
- uses: actions/upload-artifact@v4
with:
name: docs
path: ./docs/_build
build_wheels:
name: Wheels for ${{ matrix.python }} / ${{ matrix.buildplat[0] }} / ${{ matrix.buildplat[1] }}
runs-on: ${{ matrix.buildplat[0] }}
# Don't build external PRs.
if: github.repository == 'DigitalSlideArchive/HistomicsTK'
strategy:
matrix:
# See matplotlib for some of the rationale of this
buildplat:
- [ubuntu-latest, x86_64]
- [macos-latest, "x86_64 arm64"]
- [windows-latest, auto64]
python: ["cp38", "cp39", "cp310", "cp311", "cp312"]
fail-fast: false
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- run: git status && git tag --list && pwd
- uses: actions/setup-python@v5
with:
python-version: "3.x"
- name: Build wheels
uses: pypa/[email protected]
env:
CIBW_BUILD: ${{ matrix.python }}-*
CIBW_TEST_SKIP: "*-macosx_arm64"
CIBW_ARCHS: ${{ matrix.buildplat[1] }}
MACOSX_DEPLOYMENT_TARGET: "10.12"
- uses: actions/upload-artifact@v4
with:
name: dist-${{ matrix.python }}-${{ startsWith(matrix.buildplat[1], 'macosx') && 'macosx' || matrix.buildplat[1] }}
path: ./wheelhouse/*.whl
make_sdist:
name: Make SDist
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Build SDist
run: pipx run build --sdist
- uses: actions/upload-artifact@v4
with:
name: dist-sdist
path: dist/*.tar.gz
# Still on Circle-CI
# - docker
# - publish-docker
# - docs-deploy
test-release:
runs-on: ubuntu-latest
needs:
- lint
- build_wheels
- make_sdist
steps:
- uses: actions/download-artifact@v4
with:
path: dist
pattern: dist-*
merge-multiple: true
- name: List dist directory
run: ls dist
release:
runs-on: ubuntu-latest
needs:
- test
- lint
- build_wheels
- make_sdist
if: github.repository == 'DigitalSlideArchive/HistomicsTK' && ( startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master' )
environment:
name: pypi
url: https://pypi.org/p/histomicstk
permissions:
id-token: write
steps:
- uses: actions/download-artifact@v4
with:
path: dist
pattern: dist-*
merge-multiple: true
- name: List dist directory
run: ls dist
- uses: pypa/gh-action-pypi-publish@release/v1