Update heatcluster.py #36
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Removed shape from lines 75 & 76
Changed line 77 "if tabs > commas" to "if len(tabs) > len(commas)"
Change line 77 to determine whether comma or tab delimited with "if len(tabs.columns) > len(commas.columns):"
Removed "index_col=False" from lines 79 & 82
Commented out "logging.debug(df.to_string())". df.to_string is not valid in a LazyFrame
Removed check for melted matrix in lines 51-53.
"Dropped" first column by setting row_index_name=None in lines 79 & 82.
Line 102: #df.columns = df.columns.map(str) #df.columns.map doesn't work in Polars, so see it line 112 will work without it
Printing out header in lines 79 & 81 as a check.
Line 112: df.columns = df.columns.replace('|'.join(consensus_patterns), '', regex=True) # changed from df.columns.str.replace
Replaced line 112 with this: df.columns = list(map(lambda x: x.replace('|'.join(consensus_patterns), '', regex=True), df.columns))
Removed search/replace consensus_patterns in line 113
Removed line 118: #df = df.set_index(df.columns)
Examining unsorted df
Line 165: #df.replace([np.inf, -np.inf], np.nan)
#df.dropna()
df.filter(~pl.all_horizontal(pl.all().is_null())).collect() #see if this works to drop rows with all nulls
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Removed shape from lines 75 & 76