Update schema to remove molecular mechanism table #79
Workflow file for this run
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name: G2P API tests | |
on: [pull_request] | |
permissions: | |
contents: read | |
actions: read | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
services: | |
mysql: | |
image: mysql:8.0 | |
env: | |
MYSQL_ROOT_PASSWORD: root | |
MYSQL_DATABASE: test_db | |
ports: | |
- 3306:3306 | |
options: >- | |
--health-cmd="mysqladmin ping -h localhost" --health-interval=10s | |
--health-timeout=5s --health-retries=3 | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
- name: Change to the root directory | |
run: cd /home/runner/work | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.10' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
- name: Create project config file | |
run: | | |
echo "# config.ini" > /home/runner/work/config.ini | |
echo "[database]" >> /home/runner/work/config.ini | |
echo "name=test_db" >> /home/runner/work/config.ini | |
echo "user=root" >> /home/runner/work/config.ini | |
echo "password=root" >> /home/runner/work/config.ini | |
echo "host=127.0.0.1" >> /home/runner/work/config.ini | |
echo "port=3306" >> /home/runner/work/config.ini | |
- name: Run Tests | |
run: | | |
export SECRET_KEY=$(openssl rand -base64 12) | |
python manage.py makemigrations | |
python manage.py migrate | |
python manage.py test gene2phenotype_app.tests | |
env: | |
PROJECT_CONFIG_PATH: /home/runner/work/config.ini | |
working-directory: gene2phenotype_project |