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Fix bug - add publication comment #55

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merged 1 commit into from
Oct 17, 2024
Merged

Fix bug - add publication comment #55

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2 changes: 1 addition & 1 deletion gene2phenotype_project/gene2phenotype_app/serializers/curation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -377,7 +377,7 @@ def publish(self, data):
# Get or create publications
# Publications should be stored in the db before any data is stored
try:
publication_serializer = PublicationSerializer(data=publication_data)
publication_serializer = PublicationSerializer(data=publication_data, context={'user':user_obj})
# Validate the input data
if publication_serializer.is_valid(raise_exception=True):
# save and create publication obj
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4 changes: 3 additions & 1 deletion gene2phenotype_project/gene2phenotype_app/serializers/publication.py
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Original file line number Diff line number Diff line change
Expand Up @@ -234,6 +234,8 @@ def create(self, validated_data):
comment = validated_data.get('comment') # extra data - comment
number_of_families = validated_data.get('families') # extra data - families reported in publication

user_obj = self.context.get('user')

try:
publication_obj = Publication.objects.get(pmid=pmid)

Expand Down Expand Up @@ -266,7 +268,7 @@ def create(self, validated_data):
if comment is not None:
PublicationCommentSerializer(
# the user is necessary to save the comment
context={'user': self.context.get('user')}
context={'user': user_obj}
).create(comment, publication_obj)

# Add family info linked to publication
Expand Down
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