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Update fcc_Si_bandstructure.md
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weiol authored Apr 7, 2024
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24 changes: 10 additions & 14 deletions content/fcc_Si_bandstructure.md
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Expand Up @@ -11,8 +11,8 @@ Select instructions for the system you are using:
Instructions for use on the NAISS cluster Tetralith (NSC)
```
```{group-tab} MeluXina
Instructions for use on the EuroHPC cluster MeluXina
```{group-tab} LEONARDO
Instructions for use on the EuroHPC cluster LEONARDO
```
````
`````
Expand All @@ -23,21 +23,21 @@ Note that bandstructure calculations **should** be done in two steps (compare wi
First, copy the example folder which contains some of the VASP input files and useful scripts
````{tabs}
```{group-tab} Tetralith
cp -r /software/sse/manual/vasp/training/ws2023/fcc_Si_band .
cp -r /software/sse2/tetralith_el9/manual/vasp/training/ws2024/fcc_Si_band .
cd fcc_Si_band
also copy the latest POTCAR file for Si
cp /software/sse/manual/vasp/POTCARs/PBE/2015-09-21/Si/POTCAR .
cp /software/sse2/tetralith_el9/manual/vasp/POTCARs/PBE/2024-03-19/Si/POTCAR .
```
```{group-tab} MeluXina
cp -r /project/home/p200051/vasp_ws2023/examples/fcc_Si_band .
```{group-tab} LEONARDO
cp -r /leonardo_scratch/fast/EUHPC_D02_030/vasp_ws2024/examples/fcc_Si_band .
cd fcc_Si_band
also copy the latest POTCAR file for Si
cp /project/home/p200051/vasp_ws2023/vasp/potpaw_PBE.54/Si/POTCAR .
cp /leonardo_scratch/fast/EUHPC_D02_030/vasp_ws2024/potpaw_PBE.64/Si/POTCAR .
```
````

Expand Down Expand Up @@ -99,14 +99,10 @@ Here we'll assume that the first self consistent, static, step is done in the [p

cp ../fcc_Si/3.9/CHGCAR .

and submit the job to the queue (Tetralith)
and submit the job to the queue

sbatch run.sh

or run it interactively (MeluXina)

srun --hint=nomultithread -n 8 vasp_std

when the job has finished, check slurm-JOBID.out

cat slurm*.out
Expand All @@ -120,8 +116,8 @@ when the job has finished, check slurm-JOBID.out
and select: Electronic > DOS+bands > Show > Bands. As in the case of DOS, it's possible to save the data by selecting Graph > Export, to e.g. raw data or an XmGrace file (.agr).
```
```{group-tab} MeluXina
Plot the bandstructure using py4vasp via the Jupyter-notebook
```{group-tab} LEONARDO
Plot the bandstructure e.g. using py4vasp via Jupyter-notebook on your local computer
import py4vasp
mycalc = py4vasp.Calculation.from_path("/path/to/your/calculation/folder/here")
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