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Adapt cellranger #11

Merged
merged 5 commits into from
Sep 11, 2023
Merged

Adapt cellranger #11

merged 5 commits into from
Sep 11, 2023

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aricht
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@aricht aricht commented Aug 22, 2023

Description

Please include a summary of the change.

Type of change

  • [x ] Bug fix (non-breaking change which fixes an issue)
  • [x ] A documentation update

Has the appropriate test been performed?

  • Feature test has been performed
  • [x ] A pipeline test has been performed

Checklist:

  • The code follows common style guidelines (linting your code is highly recommended)
  • The code is commented reasonably
  • The documentation has been updated
  • [ x] CHANGELOG.md is updated.
  • README.md is updated

Anne Bertolini added 4 commits August 21, 2023 16:10
[FEAT] Give number threads to cellranger ADT (localcores)
f7ed3bc
[FEAT] Give threads to cellranger GEX, localcores
4b41744
[FEAT] Add parameter number_pca_adt to analyse_citeseq.R
bfc3d05 
Number of PCA dimensions cannot be larger than number of ADTs in
experiment. If this is the case the script fails. Therefore, have a
parameter that can be adjusted in the config file.
[DOC] Update CHANGELOG.md
3fe14a9
@aricht aricht merged commit 40e7d56 into main Sep 11, 2023
1 check passed
@aricht aricht deleted the adapt_cellranger branch September 11, 2023 10:16
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@aricht @ligrob