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Run ruff's linter and fix any relevant errors raised #452

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@JAlvarezJarreta JAlvarezJarreta commented Nov 6, 2024

This is just something we could explore using more since many of these "fixes" are basic things that are actually good to address. For now, just FYI.

Update: 561 errors left in src/python/ensembl/io/genomio and 398 errors left in src/python/tests.

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