extend example

EnzymeML · Sep 19, 2024 · 5e96dc0 · 5e96dc0
1 parent 85d5446
commit 5e96dc0
Showing 1 changed file with 109 additions and 0 deletions.
diff --git a/database-example/UseDatabase.ipynb b/database-example/UseDatabase.ipynb
@@ -309,6 +309,115 @@
     "# You can also view individual tables\n",
     "db.connection.table(\"Publication\")"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 19,
+   "id": "f8cad996-655f-46c3-b95e-2dc343e27717",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">✅ Inserted <span style=\"color: #008080; text-decoration-color: #008080; font-weight: bold\">1</span> rows into the database.\n",
+       "</pre>\n"
+      ],
+      "text/plain": [
+       "✅ Inserted \u001b[1;36m1\u001b[0m rows into the database.\n"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "data": {
+      "text/html": [
+       "<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\"></pre>\n"
+      ],
+      "text/plain": []
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "┏━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━┳━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓\n",
+      "┃\u001b[1m \u001b[0m\u001b[1mname\u001b[0m\u001b[1m      \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1maffiliation\u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1memail\u001b[0m\u001b[1m \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1morcid\u001b[0m\u001b[1m \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1mid\u001b[0m\u001b[1m                                  \u001b[0m\u001b[1m \u001b[0m┃\n",
+      "┡━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━╇━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩\n",
+      "│ \u001b[2m!string\u001b[0m    │ \u001b[2mstring\u001b[0m      │ \u001b[2mstring\u001b[0m │ \u001b[2mstring\u001b[0m │ \u001b[2m!string\u001b[0m                              │\n",
+      "├────────────┼─────────────┼────────┼────────┼──────────────────────────────────────┤\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m00594dae-d6e0-4b6e-812f-0b994359f4af\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m1c60c513-a4e8-49c3-beb5-a07fa5022574\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m261012b1-446d-48da-8d70-8225256a497b\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m33cce500-64de-4e8a-b64d-3f78c30a8367\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m3e28623f-c5e7-4887-8025-bcd8f21afd29\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m4362f522-28ad-4a73-95a8-171f24f2c4b3\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m461f8c9d-8a75-4cd0-9f9c-2d8ab3414872\u001b[0m │\n",
+      "│ \u001b[32mJohn Doe  \u001b[0m │ \u001b[2mNULL\u001b[0m        │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m58c672ad-962e-45df-b820-e384003455b7\u001b[0m │\n",
+      "│ \u001b[32mStrendaMan\u001b[0m │ \u001b[32mStrenda    \u001b[0m │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m5b0931b8-cb72-4c7d-bc49-4d1fee79d551\u001b[0m │\n",
+      "│ \u001b[32mJohn Doe  \u001b[0m │ \u001b[2mNULL\u001b[0m        │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m5e407774-8196-4800-bb5f-ea9e1633c85e\u001b[0m │\n",
+      "│ \u001b[2m…\u001b[0m          │ \u001b[2m…\u001b[0m           │ \u001b[2m…\u001b[0m      │ \u001b[2m…\u001b[0m      │ \u001b[2m…\u001b[0m                                    │\n",
+      "└────────────┴─────────────┴────────┴────────┴──────────────────────────────────────┘\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">Looking for John Doe\n",
+       "</pre>\n"
+      ],
+      "text/plain": [
+       "Looking for John Doe\n"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "data": {
+      "text/html": [
+       "<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">┏━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━┳━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓\n",
+       "┃<span style=\"font-weight: bold\"> name     </span>┃<span style=\"font-weight: bold\"> affiliation </span>┃<span style=\"font-weight: bold\"> email  </span>┃<span style=\"font-weight: bold\"> orcid  </span>┃<span style=\"font-weight: bold\"> id                                   </span>┃\n",
+       "┡━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━╇━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩\n",
+       "│ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">!string</span>  │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">string</span>      │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">string</span> │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">string</span> │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">!string</span>                              │\n",
+       "├──────────┼─────────────┼────────┼────────┼──────────────────────────────────────┤\n",
+       "│ <span style=\"color: #008000; text-decoration-color: #008000\">John Doe</span> │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>        │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>   │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>   │ <span style=\"color: #008000; text-decoration-color: #008000\">58c672ad-962e-45df-b820-e384003455b7</span> │\n",
+       "│ <span style=\"color: #008000; text-decoration-color: #008000\">John Doe</span> │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>        │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>   │ <span style=\"color: #7f7f7f; text-decoration-color: #7f7f7f\">NULL</span>   │ <span style=\"color: #008000; text-decoration-color: #008000\">5e407774-8196-4800-bb5f-ea9e1633c85e</span> │\n",
+       "└──────────┴─────────────┴────────┴────────┴──────────────────────────────────────┘\n",
+       "</pre>\n"
+      ],
+      "text/plain": [
+       "┏━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━┳━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓\n",
+       "┃\u001b[1m \u001b[0m\u001b[1mname\u001b[0m\u001b[1m    \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1maffiliation\u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1memail\u001b[0m\u001b[1m \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1morcid\u001b[0m\u001b[1m \u001b[0m\u001b[1m \u001b[0m┃\u001b[1m \u001b[0m\u001b[1mid\u001b[0m\u001b[1m                                  \u001b[0m\u001b[1m \u001b[0m┃\n",
+       "┡━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━╇━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩\n",
+       "│ \u001b[2m!string\u001b[0m  │ \u001b[2mstring\u001b[0m      │ \u001b[2mstring\u001b[0m │ \u001b[2mstring\u001b[0m │ \u001b[2m!string\u001b[0m                              │\n",
+       "├──────────┼─────────────┼────────┼────────┼──────────────────────────────────────┤\n",
+       "│ \u001b[32mJohn Doe\u001b[0m │ \u001b[2mNULL\u001b[0m        │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m58c672ad-962e-45df-b820-e384003455b7\u001b[0m │\n",
+       "│ \u001b[32mJohn Doe\u001b[0m │ \u001b[2mNULL\u001b[0m        │ \u001b[2mNULL\u001b[0m   │ \u001b[2mNULL\u001b[0m   │ \u001b[32m5e407774-8196-4800-bb5f-ea9e1633c85e\u001b[0m │\n",
+       "└──────────┴─────────────┴────────┴────────┴──────────────────────────────────────┘"
+      ]
+     },
+     "execution_count": 19,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "# Suppose, we only want to add an author. You can proceed in the same way as above.\n",
+    "Author = db.get_table_api(\"Author\")\n",
+    "author1 = Author(name=\"John Doe\")\n",
+    "\n",
+    "# Add and lets check the table\n",
+    "db.insert(author1)\n",
+    "table = db.connection.table(\"Author\")\n",
+    "print(table)\n",
+    "\n",
+    "# We can also filter the table\n",
+    "rich.print(\"Looking for John Doe\")\n",
+    "table[table.name == \"John Doe\"]"
+   ]
   }
  ],
  "metadata": {